mirror of
https://git.FreeBSD.org/ports.git
synced 2024-10-18 19:49:40 +00:00
- Update to 2.1.3
- Fix fetching - Remove old patch and use MAKE_ARGS instead - portlint(1) and whitespace Approved by: erwin (mentor)
This commit is contained in:
parent
ac97872da3
commit
93e805e722
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=179374
@ -6,9 +6,9 @@
|
|||||||
#
|
#
|
||||||
|
|
||||||
PORTNAME= migrate
|
PORTNAME= migrate
|
||||||
PORTVERSION= 2.0.3
|
PORTVERSION= 2.1.3
|
||||||
CATEGORIES= biology
|
CATEGORIES= biology
|
||||||
MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
|
MASTER_SITES= http://popgen.csit.fsu.edu/currentversion/
|
||||||
DISTNAME= ${PORTNAME}-${PORTVERSION}.src
|
DISTNAME= ${PORTNAME}-${PORTVERSION}.src
|
||||||
|
|
||||||
MAINTAINER= ports@FreeBSD.org
|
MAINTAINER= ports@FreeBSD.org
|
||||||
@ -17,17 +17,18 @@ COMMENT= A program to estimate population sizes and migration rates
|
|||||||
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/src
|
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/src
|
||||||
GNU_CONFIGURE= yes
|
GNU_CONFIGURE= yes
|
||||||
CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
|
CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
|
||||||
|
MAKE_ARGS= CFLAGS="${CFLAGS}"
|
||||||
|
|
||||||
MAN1= migrate.1
|
MAN1= migrate.1
|
||||||
MLINKS= migrate.1 migrate-n.1
|
MLINKS= migrate.1 migrate-n.1
|
||||||
|
|
||||||
DOCS= HISTORY HOWTO-PARALLEL README migrate.html
|
DOCS= HISTORY HOWTO-PARALLEL README migrate.html
|
||||||
EXAMPLES= README infile.benchmark infile.ep infile.msat infile.seq \
|
EXAMPLES= README infile.ep infile.msat infile.seq \
|
||||||
parmfile parmfile.benchmark parmfile.ep parmfile.msat \
|
outfile-bayes-saved outfile-ml-saved \
|
||||||
parmfile.seq
|
parmfile parmfile.testbayes parmfile.testml
|
||||||
|
|
||||||
post-patch:
|
post-patch:
|
||||||
@${REINPLACE_CMD} 's,-falign-loops=16,,g' ${WRKSRC}/configure
|
@${REINPLACE_CMD} 's,-falign-loops=16,,g' ${WRKSRC}/configure
|
||||||
|
|
||||||
do-install:
|
do-install:
|
||||||
@ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
|
@ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
|
||||||
@ -35,12 +36,12 @@ do-install:
|
|||||||
@ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
|
@ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
|
||||||
.if !defined(NOPORTDOCS)
|
.if !defined(NOPORTDOCS)
|
||||||
@ ${MKDIR} ${DOCSDIR}/graphics
|
@ ${MKDIR} ${DOCSDIR}/graphics
|
||||||
.for file in ${DOCS}
|
.for i in ${DOCS}
|
||||||
@ ${INSTALL_DATA} ${WRKSRC}/../${file} ${DOCSDIR}
|
@ ${INSTALL_DATA} ${WRKSRC}/../${i} ${DOCSDIR}
|
||||||
.endfor
|
.endfor
|
||||||
@ ${MKDIR} ${EXAMPLESDIR}
|
@ ${MKDIR} ${EXAMPLESDIR}
|
||||||
.for file in ${EXAMPLES}
|
.for i in ${EXAMPLES}
|
||||||
@ ${INSTALL_DATA} ${WRKSRC}/../example/${file} ${EXAMPLESDIR}
|
@ ${INSTALL_DATA} ${WRKSRC}/../example/${i} ${EXAMPLESDIR}
|
||||||
.endfor
|
.endfor
|
||||||
@ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
|
@ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
|
||||||
.endif
|
.endif
|
||||||
@ -48,7 +49,7 @@ do-install:
|
|||||||
.include <bsd.port.pre.mk>
|
.include <bsd.port.pre.mk>
|
||||||
|
|
||||||
.if ${ARCH} == "alpha"
|
.if ${ARCH} == "alpha"
|
||||||
BROKEN= "Does not compile"
|
BROKEN= Does not compile
|
||||||
.endif
|
.endif
|
||||||
|
|
||||||
.include <bsd.port.post.mk>
|
.include <bsd.port.post.mk>
|
||||||
|
@ -1,3 +1,3 @@
|
|||||||
MD5 (migrate-2.0.3.src.tar.gz) = 8e8e93790cb66093ad5297dcbfc83439
|
MD5 (migrate-2.1.3.src.tar.gz) = fdff82f3dd509811fa4780287a554931
|
||||||
SHA256 (migrate-2.0.3.src.tar.gz) = f1210cf94e6b67cd762eae5949f97316b082b9f052b4188cf024afc7d8c1db56
|
SHA256 (migrate-2.1.3.src.tar.gz) = 91c8636c5b7a189fd693ddb9a863ff5995abf7157f10bf005e8e3e2497d56023
|
||||||
SIZE (migrate-2.0.3.src.tar.gz) = 467274
|
SIZE (migrate-2.1.3.src.tar.gz) = 1637715
|
||||||
|
@ -1,14 +0,0 @@
|
|||||||
|
|
||||||
$FreeBSD$
|
|
||||||
|
|
||||||
--- Makefile.in.orig
|
|
||||||
+++ Makefile.in
|
|
||||||
@@ -40,7 +40,7 @@
|
|
||||||
COMMONFLAGS = -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DBAYESUPDATE
|
|
||||||
#COMMONFLAGS = -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER
|
|
||||||
COMMONVFLAGS = $(COMMONFLAGS)
|
|
||||||
-CFLAGS = @CFLAGS@ $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
|
|
||||||
+CFLAGS += @CFLAGS@ $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
|
|
||||||
# IBM PowerPC compiler on macosx needs also CC=xlc
|
|
||||||
#CFLAGS = -O3 -Q -qunroll -qalloca -qhot -qipa -qthreaded -Dpowerpc $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
|
|
||||||
THREADCFLAGS= @THREADCFLAGS@
|
|
@ -9,15 +9,14 @@ bin/migrate-n
|
|||||||
%%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif
|
%%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif
|
||||||
%%PORTDOCS%%%%DOCSDIR%%/migrate.html
|
%%PORTDOCS%%%%DOCSDIR%%/migrate.html
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/README
|
%%PORTDOCS%%%%EXAMPLESDIR%%/README
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.benchmark
|
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.ep
|
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.ep
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.msat
|
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.msat
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.seq
|
%%PORTDOCS%%%%EXAMPLESDIR%%/infile.seq
|
||||||
|
%%PORTDOCS%%%%EXAMPLESDIR%%/outfile-bayes-saved
|
||||||
|
%%PORTDOCS%%%%EXAMPLESDIR%%/outfile-ml-saved
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile
|
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.benchmark
|
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.testbayes
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.ep
|
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.testml
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.msat
|
|
||||||
%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.seq
|
|
||||||
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
|
||||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics
|
||||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
||||||
|
Loading…
Reference in New Issue
Block a user