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Convert biology to MDOCS and MEXAMPLES

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This commit is contained in:
Adam Weinberger 2014-01-03 15:46:52 +00:00
parent f5da53d279
commit 955d37365b
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=338550
14 changed files with 46 additions and 20 deletions
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9
biology/biojava/Makefile
View File

@ -24,8 +24,11 @@ PORTDOCS= biojava
PORTEXAMPLES= demos
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
.if !defined(WITHOUT_TESTS)
NO_STAGE= yes
.include <bsd.port.options.mk>
.if !defined(WITHOUT_TESTS)
regression-test:
@(cd ${BUILD_WRKSRC}; \
${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests)
@ -40,7 +43,7 @@ do-install:
.endfor
@${ECHO_MSG} " [ DONE ]"
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
@${MKDIR} ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR}
@ -51,7 +54,7 @@ do-install:
@${ECHO_MSG} " [ DONE ]"
.endif
.if !defined(NOPORTEXAMPLES)
.if ${PORT_OPTIONS:MEXAMPLES}
@${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..."
@${MKDIR} ${EXAMPLESDIR}
cd ${WRKSRC}/doc && \

2
biology/blast/Makefile
View File

@ -59,7 +59,7 @@ do-install:
.for xlink in ${XDFORMAT_LINKS}
@(cd ${PREFIX}/bin && ${LN} -s xdformat ${xlink})
.endfor
.if !defined (NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for doc in ${PORTDOCS}
${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}

13
biology/consed/Makefile
View File

@ -53,12 +53,15 @@ PORTDATA+= ${f}.dist
.endfor
PORTDOCS= README.txt
.if defined(WITH_EXAMPLES)
NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MEXAMPLES}
EXAMPLES= standard autofinish assembly_view polyphred
PLIST= ${PKGDIR}/pkg-plist.examples
.endif
NO_STAGE= yes
post-build:
(cd ${WRKSRC}/misc/454; ${CC} ${CFLAGS} sffinfo.c -o sffinfo)
(cd ${WRKSRC}/misc/454; ${CC} ${CFLAGS} sff2scf.c -o sff2scf)
@ -84,19 +87,19 @@ do-install:
.for f in ${NULLFILES}
@${INSTALL_DATA} /dev/null ${DATADIR}/${f}.dist
.endfor
.if !defined(NOPORTEXAMPLES)
.if ${PORT_OPTIONS:MEXAMPLES}
@${MKDIR} ${EXAMPLESDIR}
.for dir in ${EXAMPLES}
@${CP} -R ${WRKSRC}/${dir} ${EXAMPLESDIR}
.endfor
.endif
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}
.endfor
.endif
.if !defined(WITH_EXAMPLES)
.if ! ${PORT_OPTIONS:MEXAMPLES}
@${ECHO_CMD} "Examples were not installed. You can define WITH_EXAMPLES=yes to install them."
.endif
@${ECHO_CMD} "You must set the CONSED_HOME environment variable to '${PREFIX}'"

5
biology/finchtv/Makefile
View File

@ -19,8 +19,11 @@ SUB_FILES= pkg-message
STRIP=
NO_STAGE= yes
.include <bsd.port.options.mk>
do-install:
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/License.txt ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/ReleaseNotes.txt ${DOCSDIR}

2
biology/mafft/Makefile
View File

@ -65,7 +65,7 @@ do-install:
.endfor
@${MKDIR} ${EXAMPLESDIR}
${INSTALL_DATA} ${WRKSRC}/test/* ${EXAMPLESDIR}
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/readme ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/license ${DOCSDIR}

5
biology/mummer/Makefile
View File

@ -20,6 +20,9 @@ SCRIPTS= dnadiff exact-tandems mapview mummerplot nucmer \
DOCUMENTS= COPYRIGHT INSTALL LICENSE README
NO_STAGE= yes
.include <bsd.port.options.mk>
do-install:
.for program in ${PROGRAMS}
(cd ${WRKSRC} && ${INSTALL_PROGRAM} ${program} ${PREFIX}/bin)
@ -29,7 +32,7 @@ do-install:
(cd ${WRKSRC} && ${INSTALL_SCRIPT} ${script} ${PREFIX}/bin)
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for doc in ${DOCUMENTS}
(cd ${WRKSRC} && ${INSTALL_DATA} ${doc} ${DOCSDIR})

4
biology/njplot/Makefile
View File

@ -31,6 +31,8 @@ PORTDOCS= njplot.help njplot.html njplot.gif
MAN1= njplot.1 unrooted.1
NO_STAGE= yes
.include <bsd.port.options.mk>
.ifdef (WITHOUT_X11)
post-patch:
${REINPLACE_CMD} -e 's|njplot.*unrooted||' ${WRKSRC}/makefile
@ -43,7 +45,7 @@ do-install:
.for file in ${MAN1}
${INSTALL_MAN} ${WRKSRC}/${file} ${PREFIX}/man/man1
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}
.for file in ${PORTDOCS}
${INSTALL_MAN} ${WRKSRC}/${file} ${DOCSDIR}

5
biology/p5-bioperl-run/Makefile
View File

@ -129,10 +129,13 @@ MAN3= Bio::Tools::Run::Phylo::Phylip::DrawGram.3 \
# now install all extra stuff (docs, examples, scripts)
NO_STAGE= yes
.include <bsd.port.options.mk>
post-install:
${MKDIR} ${DATADIR}
@${CP} -Rv ${WRKSRC}/scripts ${DATADIR}
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}
.for doc in AUTHORS Changes INSTALL.PROGRAMS README
${INSTALL_DATA} ${WRKSRC}/${doc} ${DOCSDIR}

5
biology/p5-bioperl/Makefile
View File

@ -984,12 +984,15 @@ MAN3= Bio::Align::AlignI.3 \
# now install all extra stuff (docs, examples, scripts, models)
NO_STAGE= yes
.include <bsd.port.options.mk>
post-install:
${MKDIR} ${DATADIR}
${CP} -R ${WRKSRC}/scripts ${WRKSRC}/models ${DATADIR}
${MKDIR} ${EXAMPLESDIR}
${CP} -R ${WRKSRC}/examples/* ${EXAMPLESDIR}
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}
.for doc in AUTHORS BUGS Changes DEPENDENCIES DEPRECATED INSTALL LICENSE MANIFEST README
${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}

5
biology/paml/Makefile
View File

@ -18,11 +18,14 @@ BINARIES= baseml basemlg chi2 codeml evolver pamp yn00
DOC_FILES= MCMCtreeDoc.pdf pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt
NO_STAGE= yes
.include <bsd.port.options.mk>
do-install:
.for f in ${BINARIES}
${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}
.for f in ${DOC_FILES}
${INSTALL_DATA} ${WRKDIR}/${PORTNAME}44/doc/${f} ${DOCSDIR}

2
biology/phd2fasta/Makefile
View File

@ -38,7 +38,7 @@ do-install:
.for f in ${BINARIES}
@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}

2
biology/phrap/Makefile
View File

@ -52,7 +52,7 @@ do-install:
.for f in ${PORTDATA}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}

2
biology/phred/Makefile
View File

@ -51,7 +51,7 @@ do-install:
.for f in ${DATAFILES}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}/${f}.dist
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}

5
biology/velvet/Makefile
View File

@ -59,6 +59,9 @@ PLIST_FILES+= %%SITE_PERL%%/${f:H:T}/${f:T}
PORTDOCS= ChangeLog Manual.pdf Columbus_manual.pdf
NO_STAGE= yes
.include <bsd.port.options.mk>
post-patch:
.for f in ${SCRIPTS}
${REINPLACE_CMD} -e s,#!/usr/bin/perl,${PERL}, ${WRKSRC}/${f}
@ -80,7 +83,7 @@ do-install:
.for f in ${PERLMOD_FILES}
${INSTALL_DATA} ${WRKSRC}/${f} ${PREFIX}/${SITE_PERL_REL}/${f:H:T}/${f:T}
.endfor
.if !defined(NOPORTDOCS)
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
${INSTALL_MAN} ${WRKSRC}/${f} ${DOCSDIR}