mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-12-21 04:06:46 +00:00
Code Issues Releases Activity

biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0

Browse Source
This commit is contained in:
Yuri Victorovich 2020-09-25 06:57:43 +00:00
parent 0de00502f9
commit 9ea8f6721b
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=549992
3 changed files with 17 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

19
biology/ncbi-cxx-toolkit/Makefile
View File

@ -1,10 +1,9 @@
# $FreeBSD$
PORTNAME= ncbi-cxx-toolkit
DISTVERSION= 21_0_0
PORTREVISION= 2
DISTVERSION= 22_0_0
CATEGORIES= biology science devel
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2018/Apr_2_2018/
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/
DISTNAME= ncbi_cxx--${DISTVERSION}
MAINTAINER= yuri@FreeBSD.org
@ -13,7 +12,8 @@ COMMENT= NCBI C++ Toolkit
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
LIB_DEPENDS= libpcre.so:devel/pcre
LIB_DEPENDS= liblmdb.so:databases/lmdb \
libpcre.so:devel/pcre
RUN_DEPENDS= bash:shells/bash
USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg
@ -23,8 +23,15 @@ USE_XORG= x11 xpm
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-debug --with-dll --without-static
post-install: # autoplist: thousands of files
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/run_with_lock
post-install:
# strip
@${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD}
@${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD}
# remove an empty directory
@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
# remove the conflicting file
@${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so
# autoplist: thousands of files
@cd ${STAGEDIR}${PREFIX} && \
${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \
${FIND} * -type f -or -type l >> ${TMPPLIST}

6
biology/ncbi-cxx-toolkit/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1538937167
SHA256 (ncbi_cxx--21_0_0.tar.gz) = 48cc3ae24ca63d1ab1be148e7525e8c5b9f4eaa5eb36d172800784b640a84a4f
SIZE (ncbi_cxx--21_0_0.tar.gz) = 52661343
TIMESTAMP = 1600993142
SHA256 (ncbi_cxx--22_0_0.tar.gz) = ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f
SIZE (ncbi_cxx--22_0_0.tar.gz) = 56042079

2
biology/ncbi-cxx-toolkit/pkg-descr
View File

@ -21,4 +21,4 @@ It contains:
* Portable FLTK and OpenGL based GUI and graphic libraries
* XmlWrapp (XML parsing and handling, XSLT, XPath)
WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
WWW: https://ncbi.github.io/cxx-toolkit/