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Code Issues Releases Activity

- Update to 1.4.1

Browse Source 
- Add MPICH2 option
- Convert to new options helper
- Support STAGEDIR

Changes:	http://trac.mcs.anl.gov/projects/parallel-netcdf/wiki/ReleaseNotes-1.4.1
		http://trac.mcs.anl.gov/projects/parallel-netcdf/wiki/ReleaseNotes-1.4.0
This commit is contained in:
Sunpoet Po-Chuan Hsieh 2014-03-09 16:56:32 +00:00
parent bc451d2589
commit a85c71fa79
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=347663
14 changed files with 229 additions and 31 deletions
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46
science/pnetcdf/Makefile
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@ -2,54 +2,44 @@
# $FreeBSD$
PORTNAME= pnetcdf
PORTVERSION= 1.3.1
PORTREVISION= 1
PORTVERSION= 1.4.1
CATEGORIES= science parallel
MASTER_SITES= http://ftp.mcs.anl.gov/pub/parallel-netcdf/ \
MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
LOCAL/sunpoet
DISTNAME= parallel-netcdf-${PORTVERSION}
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Library providing high-performance I/O
OPTIONS_DEFINE= DOCS OPENMPI
OPENMPI_DESC= Use openmpi instead of mpich2
OPTIONS_DEFINE= DOCS
OPTIONS_SINGLE= MPI
OPTIONS_SINGLE_MPI= OPENMPI MPICH2
OPTIONS_DEFAULT=OPENMPI
CONFLICTS= hdf-4.*
CFLAGS+= -fPIC -DPIC
CONFIGURE_ENV= M4FLAGS=""
GNU_CONFIGURE= yes
MAKE_JOBS_UNSAFE= yes
USE_BZIP2= yes
USES= fortran gmake
MAN1= ncmpidiff.1 ncmpidump.1 ncmpigen.1
MAN3= pnetcdf.3
PORTDOCS= COPYRIGHT INSTALL README
PLIST_FILES= bin/ncmpidiff bin/ncmpidump bin/ncmpigen bin/ncvalid \
include/pnetcdf.h include/pnetcdf.inc include/pnetcdf.mod \
lib/libpnetcdf.a
NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MOPENMPI}
BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpicc:${PORTSDIR}/net/openmpi
RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/lib/libmpi.so:${PORTSDIR}/net/openmpi
CONFIGURE_ARGS+=--with-mpi=${LOCALBASE}/mpi/openmpi
.else
BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:${PORTSDIR}/net/mpich2
RUN_DEPENDS+= ${LOCALBASE}/lib/libmpich.so:${PORTSDIR}/net/mpich2
CONFIGURE_ARGS+=--with-mpi=${LOCALBASE}
.endif
#FORTRAN_CONFIGURE_OFF= --disable-fortran
#FORTRAN_CONFIGURE_ON= --enable-fortran
#FORTRAN_USES= fortran
MPICH2_CONFIGURE_ON= --with-mpi=${LOCALBASE}
MPICH2_LIB_DEPENDS= libmpich.so:${PORTSDIR}/net/mpich2
OPENMPI_CONFIGURE_ON= --with-mpi=${LOCALBASE}/mpi/openmpi
OPENMPI_LIB_DEPENDS= libmpi.so:${PORTSDIR}/net/openmpi
post-install:
.for file in ncmpidiff ncmpidump ncmpigen ncvalid
${STRIP_CMD} ${PREFIX}/bin/${file}
.for file in ncmpidiff ncmpidump ncmpigen ncmpivalid
${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${file}
.endfor
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${DOCSDIR}/
cd ${WRKSRC}/ && ${INSTALL_DATA} ${PORTDOCS} ${DOCSDIR}/
.endif
${MKDIR} ${STAGEDIR}${DOCSDIR}/
cd ${WRKSRC}/ && ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}/
.include <bsd.port.mk>

4
science/pnetcdf/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (parallel-netcdf-1.3.1.tar.bz2) = 8d8fc0dbec39bcc01a8d556a8f6f65199e7da42d2e15cd24a8d96a750fba8a61
SIZE (parallel-netcdf-1.3.1.tar.bz2) = 1658379
SHA256 (parallel-netcdf-1.4.1.tar.bz2) = a79e8bfebde5baaa17470ff4425cbdcf99bd3cd265efdf3a8aedeca91c057463
SIZE (parallel-netcdf-1.4.1.tar.bz2) = 1622328

29
science/pnetcdf/files/patch-configure Normal file
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@ -0,0 +1,29 @@
--- configure.orig 2013-12-24 06:35:50.000000000 +0800
+++ configure 2014-03-09 22:42:45.285478789 +0800
@@ -2886,10 +2886,11 @@
ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
+PNETCDF_VERSION_MAJOR=`echo ${PACKAGE_VERSION} | cut -d. -f1`
+PNETCDF_VERSION_MINOR=`echo ${PACKAGE_VERSION} | cut -d. -f2`
+PNETCDF_VERSION_SUB=`echo ${PACKAGE_VERSION} | cut -d. -f3`
+PNETCDF_VERSION_PRE=`echo ${PACKAGE_VERSION} | cut -d. -f4`
-saved_IFS=${IFS}
-IFS=. read PNETCDF_VERSION_MAJOR PNETCDF_VERSION_MINOR PNETCDF_VERSION_SUB PNETCDF_VERSION_PRE <<< "$PACKAGE_VERSION"
-IFS=${saved_IFS}
PNETCDF_VERSION="${PNETCDF_VERSION_MAJOR}.${PNETCDF_VERSION_MINOR}"
if test x${PNETCDF_VERSION_SUB} != x ; then
@@ -2899,11 +2900,6 @@
fi
fi
-SVN_DATE="$LastChangedDate: 2013-12-23 16:32:11 -0600 (Mon, 23 Dec 2013) $"
-saved_IFS=${IFS}
-IFS="\ " read t_key PNETCDF_RELEASE_DATE2 t_time t_zone t_string <<< ${SVN_DATE}
-IFS="() $," read t_day PNETCDF_RELEASE_DATE <<< $t_string
-IFS=${saved_IFS}
_DEBUG=no

17
science/pnetcdf/files/patch-man-Makefile.in Normal file
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@ -0,0 +1,17 @@
--- man/Makefile.in.orig 2013-11-17 13:18:16.000000000 +0800
+++ man/Makefile.in 2014-03-09 22:42:45.288471552 +0800
@@ -43,12 +43,12 @@
test:
install: $(MANUAL)
- $(INSTALL) -d -m 755 $(MANDIR)/man3
+ $(INSTALL) -d -m 755 $(DESTDIR)$(MANDIR)/man3
@for i in $(MANUAL) ; do ( \
if test -f $(srcdir)/$$i; then file=$(srcdir)/$$i; \
else file=$$i; fi; \
fn=`basename $$i` ; \
- $(INSTALL_DATA) $$file $(MANDIR)/man3/$$fn \
+ $(INSTALL_DATA) $$file $(DESTDIR)$(MANDIR)/man3/$$fn \
; ) ; done
uninstall:

32
science/pnetcdf/files/patch-rules.make Normal file
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@ -0,0 +1,32 @@
--- rules.make.orig 2013-10-27 00:53:18.000000000 +0800
+++ rules.make 2014-03-09 22:42:45.290481492 +0800
@@ -125,21 +125,21 @@
# $(INSTALL)ation:
$(INCDIR)/$(HEADER): $(INCDIR) $(HEADER)
- $(INSTALL) $(srcdir)/$(HEADER) $@
+ $(INSTALL) $(srcdir)/$(HEADER) $(DESTDIR)$@
$(INCDIR)/$(HEADER1): $(INCDIR) $(HEADER1)
- $(INSTALL) $(srcdir)/$(HEADER1) $@
+ $(INSTALL) $(srcdir)/$(HEADER1) $(DESTDIR)$@
$(INCDIR)/$(HEADER2): $(INCDIR) $(HEADER2)
- $(INSTALL) $(srcdir)/$(HEADER2) $@
+ $(INSTALL) $(srcdir)/$(HEADER2) $(DESTDIR)$@
$(INCDIR)/$(HEADER3): $(INCDIR) $(HEADER3)
- $(INSTALL) $(srcdir)/$(HEADER3) $@
+ $(INSTALL) $(srcdir)/$(HEADER3) $(DESTDIR)$@
$(LIBDIR)/$(LIBRARY): $(LIBDIR) $(LIBRARY)
- $(INSTALL) -d -m 755 $(LIBDIR)
- $(INSTALL) -m 644 $(LIBRARY) $@
+ $(INSTALL) -d -m 755 $(DESTDIR)$(LIBDIR)
+ $(INSTALL) -m 644 $(LIBRARY) $(DESTDIR)$@
$(BINDIR)/$(PROGRAM): $(BINDIR) $(PROGRAM)
- $(INSTALL) -d -m 755 $(BINDIR)
- $(INSTALL) -m 755 $(PROGRAM) $@
+ $(INSTALL) -d -m 755 $(DESTDIR)$(BINDIR)
+ $(INSTALL) -m 755 $(PROGRAM) $(DESTDIR)$@
#$(BINDIR) \
#$(INCDIR) \

17
science/pnetcdf/files/patch-src-lib-Makefile.in Normal file
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@ -0,0 +1,17 @@
--- src/lib/Makefile.in.orig 2013-11-17 02:02:38.000000000 +0800
+++ src/lib/Makefile.in 2014-03-09 22:42:45.293477277 +0800
@@ -97,10 +97,10 @@
$(RANLIB) $@
install:
- $(INSTALL) -d -m 755 $(LIBDIR)
- $(INSTALL_DATA) $(LIBRARY) $(LIBDIR)/$(LIBRARY)
- $(INSTALL) -d -m 755 $(INCDIR)
- $(INSTALL_DATA) $(HEADER) $(INCDIR)/$(HEADER)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(LIBDIR)
+ $(INSTALL_DATA) $(LIBRARY) $(DESTDIR)$(LIBDIR)/$(LIBRARY)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(INCDIR)
+ $(INSTALL_DATA) $(HEADER) $(DESTDIR)$(INCDIR)/$(HEADER)
uninstall:
$(RM) -f $(LIBDIR)/$(LIBRARY)

13
science/pnetcdf/files/patch-src-libf-Makefile.in Normal file
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@ -0,0 +1,13 @@
--- src/libf/Makefile.in.orig 2013-10-27 00:53:18.000000000 +0800
+++ src/libf/Makefile.in 2014-03-09 22:42:45.296474221 +0800
@@ -351,8 +351,8 @@
$(SED) -e "s%/\*%!%g" -e "s%\*/%%g" $< > $@
install: pnetcdf.inc
- $(INSTALL) -d -m 755 $(INCDIR)
- $(INSTALL_DATA) pnetcdf.inc $(INCDIR)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(INCDIR)
+ $(INSTALL_DATA) pnetcdf.inc $(DESTDIR)$(INCDIR)
uninstall:
$(RM) -f $(INCDIR)/pnetcdf.inc

13
science/pnetcdf/files/patch-src-libf90-Makefile.in Normal file
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@ -0,0 +1,13 @@
--- src/libf90/Makefile.in.orig 2013-12-15 01:17:42.000000000 +0800
+++ src/libf90/Makefile.in 2014-03-09 22:42:45.298473932 +0800
@@ -71,8 +71,8 @@
$(RANLIB) $(LIBRARY)
install: $(PNETCDF_MOD)
- $(INSTALL) -d -m 755 $(INCDIR)
- $(INSTALL_DATA) $(PNETCDF_MOD) $(INCDIR)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(INCDIR)
+ $(INSTALL_DATA) $(PNETCDF_MOD) $(DESTDIR)$(INCDIR)
uninstall:
$(RM) -f $(INCDIR)/$(PNETCDF_MOD)

18
science/pnetcdf/files/patch-src-utils-ncmpidiff-Makefile.in Normal file
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@ -0,0 +1,18 @@
--- src/utils/ncmpidiff/Makefile.in.orig 2013-11-03 03:15:49.000000000 +0800
+++ src/utils/ncmpidiff/Makefile.in 2014-03-09 22:42:45.301478900 +0800
@@ -37,11 +37,11 @@
set -e ; cd $(BUILDDIR)/src && $(MAKE) $(MFLAGS) all
install:
- $(INSTALL) -d -m 755 $(MANDIR)/man1
- $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(MANDIR)/man1/$(MANUAL)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(MANDIR)/man1
+ $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(DESTDIR)$(MANDIR)/man1/$(MANUAL)
- $(INSTALL) -d $(BINDIR)
- $(INSTALL) -m 755 $(PROGRAM) $(BINDIR)/$(PROGRAM)
+ $(INSTALL) -d $(DESTDIR)$(BINDIR)
+ $(INSTALL) -m 755 $(PROGRAM) $(DESTDIR)$(BINDIR)/$(PROGRAM)
uninstall:
$(RM) -f $(BINDIR)/$(PROGRAM)

18
science/pnetcdf/files/patch-src-utils-ncmpidump-Makefile.in Normal file
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@ -0,0 +1,18 @@
--- src/utils/ncmpidump/Makefile.in.orig 2013-11-03 03:15:49.000000000 +0800
+++ src/utils/ncmpidump/Makefile.in 2014-03-09 22:42:45.303474265 +0800
@@ -48,11 +48,11 @@
echo "*** $(PROGRAM) test successful ***"
install:
- $(INSTALL) -d -m 755 $(MANDIR)/man1
- $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(MANDIR)/man1/$(MANUAL)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(MANDIR)/man1
+ $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(DESTDIR)$(MANDIR)/man1/$(MANUAL)
- $(INSTALL) -d $(BINDIR)
- $(INSTALL) -m 755 $(PROGRAM) $(BINDIR)/$(PROGRAM)
+ $(INSTALL) -d $(DESTDIR)$(BINDIR)
+ $(INSTALL) -m 755 $(PROGRAM) $(DESTDIR)$(BINDIR)/$(PROGRAM)
uninstall:
$(RM) -f $(BINDIR)/$(PROGRAM)

18
science/pnetcdf/files/patch-src-utils-ncmpigen-Makefile.in Normal file
View File

@ -0,0 +1,18 @@
--- src/utils/ncmpigen/Makefile.in.orig 2013-11-03 03:15:49.000000000 +0800
+++ src/utils/ncmpigen/Makefile.in 2014-03-09 22:42:45.306475408 +0800
@@ -48,11 +48,11 @@
test: $(PROGRAM) b-test c-test FORCE
install:
- $(INSTALL) -d -m 755 $(MANDIR)/man1
- $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(MANDIR)/man1/$(MANUAL)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(MANDIR)/man1
+ $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(DESTDIR)$(MANDIR)/man1/$(MANUAL)
- $(INSTALL) -d $(BINDIR)
- $(INSTALL) -m 755 $(PROGRAM) $(BINDIR)/$(PROGRAM)
+ $(INSTALL) -d $(DESTDIR)$(BINDIR)
+ $(INSTALL) -m 755 $(PROGRAM) $(DESTDIR)$(BINDIR)/$(PROGRAM)
uninstall:
$(RM) -f $(BINDIR)/$(PROGRAM)

18
science/pnetcdf/files/patch-src-utils-ncmpivalid-Makefile.in Normal file
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@ -0,0 +1,18 @@
--- src/utils/ncmpivalid/Makefile.in.orig 2013-11-03 03:15:49.000000000 +0800
+++ src/utils/ncmpivalid/Makefile.in 2014-03-09 22:42:45.308476499 +0800
@@ -37,11 +37,11 @@
set -e ; cd $(BUILDDIR)/src && $(MAKE) $(MFLAGS) all
install:
- $(INSTALL) -d -m 755 $(MANDIR)/man1
- $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(MANDIR)/man1/$(MANUAL)
+ $(INSTALL) -d -m 755 $(DESTDIR)$(MANDIR)/man1
+ $(INSTALL_DATA) $(srcdir)/$(MANUAL) $(DESTDIR)$(MANDIR)/man1/$(MANUAL)
- $(INSTALL) -d $(BINDIR)
- $(INSTALL) -m 755 $(PROGRAM) $(BINDIR)/$(PROGRAM)
+ $(INSTALL) -d $(DESTDIR)$(BINDIR)
+ $(INSTALL) -m 755 $(PROGRAM) $(DESTDIR)$(BINDIR)/$(PROGRAM)
uninstall:
$(RM) -f $(BINDIR)/$(PROGRAM)

2
science/pnetcdf/pkg-descr
View File

@ -5,4 +5,4 @@ However, it does so in a serial manner, making it difficult to achieve high
I/O performance. By making some small changes to the API specified by NetCDF,
we can use MPI-IO and its collective operations.
WWW: http://www.mcs.anl.gov/parallel-netcdf
WWW: http://trac.mcs.anl.gov/projects/parallel-netcdf

15
science/pnetcdf/pkg-plist Normal file
View File

@ -0,0 +1,15 @@
bin/ncmpidiff
bin/ncmpidump
bin/ncmpigen
bin/ncmpivalid
include/pnetcdf.h
include/pnetcdf.inc
include/pnetcdf.mod
lib/libpnetcdf.a
man/man1/ncmpidiff.1.gz
man/man1/ncmpidump.1.gz
man/man1/ncmpigen.1.gz
man/man1/ncmpivalid.1.gz
man/man3/pnetcdf.3.gz
man/man3/pnetcdf_f77.3.gz
man/man3/pnetcdf_f90.3.gz