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Code Issues Releases Activity

update to 1.5.0.1.

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This commit is contained in:
Maho Nakata 2012-02-16 02:30:10 +00:00
parent 1c08c2201c
commit a8d4c9422e
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=291502
4 changed files with 76 additions and 40 deletions
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12
biology/pymol/Makefile
View File

@ -18,25 +18,25 @@ RUN_DEPENDS= ${PYNUMERIC} \
LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \
freetype.9:${PORTSDIR}/print/freetype2
VERSION= 1.4.1
SVNREVISION= 3946
VERSION= 1.5.0.1
SVNREVISION= 3978
USE_BZIP2= yes
WRKSRC= ${WRKDIR}/pymol-${PORTVERSION}
USE_GL= glut glew
USE_GMAKE= yes
USE_PYTHON= yes
PLIST_SUB= PYTHON_VER=${PYTHON_VER}
PLIST_SUB= PYMOL_VER=${VERSION} PYTHON_VER=${PYTHON_VER}
pre-build:
@${REINPLACE_CMD} -e "s+%%LOCALBASE%%+${LOCALBASE}+" ${WRKSRC}/setup.py
#do build process actually installs some files, so omitted.
do-build:
@cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} build
do-install:
@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} install \
; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install)
@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} install)
@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install)
@${INSTALL_SCRIPT} ${WRKSRC}/pymol ${PREFIX}/bin/pymol
#maintainance

4
biology/pymol/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (pymol-1.4.1.3946.tar.bz2) = 0b505ed6275fa1aeec6036830d28c8ee5feedfd67bcac7def873f0481f2cb558
SIZE (pymol-1.4.1.3946.tar.bz2) = 9038319
SHA256 (pymol-1.5.0.1.3978.tar.bz2) = 76ff4a6bc126f3fd4dccb62c2345fea3b2a007ecc687d89f7fe21b8f5a0496fc
SIZE (pymol-1.5.0.1.3978.tar.bz2) = 9730397

52
biology/pymol/files/patch-setup.py
View File

@ -1,21 +1,31 @@
--- setup.py.bak 2010-09-16 10:45:18.000000000 +0900
+++ setup.py 2010-09-16 10:51:57.000000000 +0900
@@ -127,7 +127,8 @@
inc_dirs=["ov/src",
"layer0","layer1","layer2",
"layer3","layer4","layer5",
- "/usr/include/freetype2",
+ "%%LOCALBASE%%/include",
+ "%%LOCALBASE%%/include/freetype2",
# "/users/warren/ext/include",
# VMD plugin support
# "contrib/uiuc/plugins/include",
@@ -139,7 +140,7 @@
]
pyogl_libs = ["GL","GLU","glut"]
lib_dirs=[
- "/usr/X11R6/lib",
+ "%%LOCALBASE%%/lib",
# "/users/warren/pymol/ext/lib"
]
def_macros=[("_PYMOL_MODULE",None),
--- setup.py 2012-02-14 04:02:02.000000000 +0900
+++ setup.py 2012-02-15 13:09:38.000000000 +0900
@@ -159,7 +159,8 @@
"layer3",
"layer4",
"layer5",
- "/usr/include/freetype2",
+ "%%LOCALBASE%%/include/freetype2",
+ "%%LOCALBASE%%/include",
# VMD plugin support
# "contrib/uiuc/plugins/include",
# "contrib/uiuc/plugins/molfile_plugin/src",
@@ -181,7 +181,7 @@
"GLU",
"glut",
"GLEW"]
- lib_dirs = [ "/usr/X11R6/lib64", ]
+ lib_dirs = [ "%%LOCALBASE%%/lib", ]
def_macros = [ ("_PYMOL_MODULE",None),
("_PYMOL_INLINE",None),
("_PYMOL_FREETYPE",None),
@@ -201,7 +202,7 @@
"-funroll-loops",
"-O3",
"-g" ]
- ext_link_args = []
+ ext_link_args = [ "-L%%LOCALBASE%%/lib" ]
distribution = setup ( # Distribution meta-data

48
biology/pymol/pkg-plist
View File

@ -114,6 +114,8 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pmg_tk/Demo.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.py
%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/PyMOLMapLoad.py
%%PYTHON_SITELIBDIR%%/pmg_tk/PyMOLMapLoad.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.py
%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/Setting.py
@ -122,21 +124,21 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pmg_tk/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/SimpleColorChooser.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/SimpleColorChooser.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ColorMap.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ColorMap.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ColorRampModel.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ColorRampModel.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ModalWindow.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/ModalWindow.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/SimpleColorChooser.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/SimpleColorChooser.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/hist.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/volume.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/hist.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/volume.py
%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/volume.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.pyc
@ -146,7 +148,7 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pmg_tk/startup/remote_pdb_load.pyc
%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.pyc
%%PYTHON_SITELIBDIR%%/pymol-1.4.0-py%%PYTHON_VER%%.egg-info
%%PYTHON_SITELIBDIR%%/pymol-%%PYMOL_VER%%-py%%PYTHON_VER%%.egg-info
%%PYTHON_SITELIBDIR%%/pymol/__init__.py
%%PYTHON_SITELIBDIR%%/pymol/__init__.pyc
%%PYTHON_SITELIBDIR%%/pymol/_cmd.so
@ -170,6 +172,8 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/computing.pyc
%%PYTHON_SITELIBDIR%%/pymol/constants.py
%%PYTHON_SITELIBDIR%%/pymol/constants.pyc
%%PYTHON_SITELIBDIR%%/pymol/constants_palette.py
%%PYTHON_SITELIBDIR%%/pymol/constants_palette.pyc
%%PYTHON_SITELIBDIR%%/pymol/contrib/__init__.py
%%PYTHON_SITELIBDIR%%/pymol/contrib/__init__.pyc
%%PYTHON_SITELIBDIR%%/pymol/controlling.py
@ -192,10 +196,10 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/fitting.pyc
%%PYTHON_SITELIBDIR%%/pymol/gui.py
%%PYTHON_SITELIBDIR%%/pymol/gui.pyc
%%PYTHON_SITELIBDIR%%/pymol/helping.py
%%PYTHON_SITELIBDIR%%/pymol/helping.pyc
%%PYTHON_SITELIBDIR%%/pymol/headering.py
%%PYTHON_SITELIBDIR%%/pymol/headering.pyc
%%PYTHON_SITELIBDIR%%/pymol/helping.py
%%PYTHON_SITELIBDIR%%/pymol/helping.pyc
%%PYTHON_SITELIBDIR%%/pymol/importing.py
%%PYTHON_SITELIBDIR%%/pymol/importing.pyc
%%PYTHON_SITELIBDIR%%/pymol/internal.py
@ -405,14 +409,33 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.gif
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.xbm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/cmyk.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/hsv.ppm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/incentive_splash.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/matrices/BLOSUM62
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/splash.old.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/hsv.ppm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/splash.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/splash_edu.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/cylinder.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/cylinder.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/cylinder_no_ff.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default_es.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default_es.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default_es2.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/default_es2.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/shadertext.txt
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/sphere.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/sphere.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/sphere_arb_fs.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/sphere_arb_vs.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/spheredirect.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/volume.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/volume.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/tut/1hpv.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/xray/atomformfactor2.dat
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/xray/atomformfactor5.dat
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/xray/spgbase.dat
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/chempy/generate_amber.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/chempy/generate_mmff.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/cookbook/area_diff.pml
@ -449,6 +472,7 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/chempy_model03.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/click_ordered_list.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/count_molecules.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/demo.sdf
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/extend_demo01.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/gl01.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/devel/gl02.py
@ -520,6 +544,7 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/dat/small03.mol2
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/dat/tiny.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/dat/water.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/headerTest.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/inp/B01.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/inp/B02.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/inp/B03.py
@ -773,12 +798,12 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/xwin.pyc
%%PYTHON_SITELIBDIR%%/web/__init__.py
%%PYTHON_SITELIBDIR%%/web/__init__.pyc
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.py
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.pyc
%%PYTHON_SITELIBDIR%%/web/examples/__init__.py
%%PYTHON_SITELIBDIR%%/web/examples/__init__.pyc
%%PYTHON_SITELIBDIR%%/web/examples/justhttpd.py
%%PYTHON_SITELIBDIR%%/web/examples/justhttpd.pyc
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.py
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.pyc
@dirrm %%PYTHON_SITELIBDIR%%/web/examples
@dirrm %%PYTHON_SITELIBDIR%%/web
@dirrm %%PYTHON_SITELIBDIR%%/pymol/wizard
@ -795,6 +820,7 @@ bin/pymol
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/cookbook
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/chempy
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/xray
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/tut
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders
@dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/matrices