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Code Issues Releases Activity

- Update to 3.1.4

Browse Source 
PR:		ports/146411
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
This commit is contained in:
Sylvio Cesar Teixeira 2010-05-09 13:59:34 +00:00
parent bd5dc9a283
commit b5dabfb20d
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=254018
3 changed files with 18 additions and 11 deletions
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2
biology/migrate/Makefile
View File

@ -6,7 +6,7 @@
#
PORTNAME= migrate
PORTVERSION= 3.1.3
PORTVERSION= 3.1.4
CATEGORIES= biology
MASTER_SITES= http://people.sc.fsu.edu/~beerli/popgen/currentversion/
DISTNAME= ${PORTNAME}-${PORTVERSION}.src

6
biology/migrate/distinfo
View File

@ -1,3 +1,3 @@
MD5 (migrate-3.1.3.src.tar.gz) = 20b07feaeb3624769d6befec640a30e2
SHA256 (migrate-3.1.3.src.tar.gz) = 176f516c8dec12b5370230e91dbc454b2ab6740656fdbb1a2475a5377fee630d
SIZE (migrate-3.1.3.src.tar.gz) = 2021127
MD5 (migrate-3.1.4.src.tar.gz) = a1ffa3baa8a78b17b2dcb387de7801ee
SHA256 (migrate-3.1.4.src.tar.gz) = f09d35f544865f1cde3677b9b347b8a5de9e907f81d4f509e8f15c2fd28ea110
SIZE (migrate-3.1.4.src.tar.gz) = 2227530

21
biology/migrate/files/patch-Makefile.in
View File

@ -1,16 +1,16 @@
--- Makefile.in.orig 2008-12-06 03:19:25.000000000 +0900
+++ Makefile.in 2008-12-09 15:17:10.000000000 +0900
@@ -79,7 +79,7 @@
--- Makefile.in.orig 2010-05-01 16:14:26.000000000 -0400
+++ Makefile.in 2010-05-08 16:08:49.000000000 -0400
@@ -80,7 +80,7 @@
# -DNEXUSTREE print nexus tree instead of plain newick trees
# -UEP calculates unique event polymorphism
NEWSTUFF = -DNEWVERSION -DBFDEBUG
NEWSTUFF =
-COMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS)
+COMMONFLAGS = $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS)
#
# combine the common flags with the version number and subversion number
COMMONVFLAGS = $(COMMONFLAGS) -DMIGRATESUBVERSION=\"\\\"$(MIGRATESUBVERSION)\\\"\"
@@ -195,22 +195,21 @@
@echo ' make install (installs the executables and man page)'
@@ -202,22 +202,21 @@
@echo ' make install (installs the executables and man page [out of date])'
@echo ' [there are other targets for debugging purposes, check the Makefile]'
-all:: haru
@ -36,7 +36,7 @@
mpis-thread:: haru
$(MAKE) $(NAME) "CC=$(MPICC)" "CFLAGS = $(CFLAGS) $(PRETTYCFLAGS) $(THREADCFLAGS) -DMPI -DSLOWNET -DNEWREPLICANT -DMPIREPLICANT" "LIBS = $(OTHERLIBS) $(PDFLIB) $(LIBS)"
@@ -398,22 +397,22 @@
@@ -405,22 +404,22 @@
else echo Must define $@; exit 1; fi
$(NAME): $(PRODUCT_DEPENDS)
@ -64,3 +64,10 @@
#----------------------------------------------------------------
@@ -473,4 +472,4 @@
#----------------------------------------------------------------
# BEAGLE
beagle:
- $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL"
\ No newline at end of file
+ $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL"