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Code Issues Releases Activity

biology/py-cutadapt: Update to 3.2

Browse Source 
biology/py-dnaio: Update to 0.5.0
archivers/py-xopen: Update to 1.0.0

Numerous bug fixes and enhancements since cutadapt 3.2

Document cutadapt dependency versions dnaio~=0.5.0 xopen~=1.0.0
Bump python dependency to 3.6+ to restrict package builds
This commit is contained in:
Jason W. Bacon 2021-02-02 20:39:09 +00:00
parent fa44c82965
commit b9a6bfa5fa
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=563844
6 changed files with 17 additions and 17 deletions
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4
archivers/py-xopen/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= xopen
DISTVERSION= 0.8.4
DISTVERSION= 1.0.0 # py-cutadapt requires 1.0.x
CATEGORIES= archivers python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -17,7 +17,7 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAV
pigz>=0:archivers/pigz
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR}
USES= python:3.4+
USES= python:3.6+
USE_PYTHON= autoplist distutils
NO_ARCH= yes

6
archivers/py-xopen/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1574517144
SHA256 (xopen-0.8.4.tar.gz) = dcd8f5ef5da5564f514a990573a48a0c347ee1fdbb9b6374d31592819868f7ba
SIZE (xopen-0.8.4.tar.gz) = 13029
TIMESTAMP = 1612290513
SHA256 (xopen-1.0.0.tar.gz) = 2fd9f537d96c6fb2f0bfed2c5ea133d8961dcef0baa3d8c388cb8bea2af5b090
SIZE (xopen-1.0.0.tar.gz) = 17487

8
biology/py-cutadapt/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= cutadapt
DISTVERSION= 2.7
DISTVERSION= 3.2
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -13,12 +13,12 @@ LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.8.4:archivers/py-xopen@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}dnaio>=0.4.1:biology/py-dnaio@${PY_FLAVOR}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen==1.0:archivers/py-xopen@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}dnaio==0.5:biology/py-dnaio@${PY_FLAVOR}
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR}
USES= python:3.5+
USES= python:3.6+
USE_PYTHON= autoplist concurrent cython distutils
post-install:

6
biology/py-cutadapt/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1574517013
SHA256 (cutadapt-2.7.tar.gz) = 070dec8d94b8bda72906c614b9e71bd61254a67a176dd17e5b57671edd567983
SIZE (cutadapt-2.7.tar.gz) = 272702
TIMESTAMP = 1612289840
SHA256 (cutadapt-3.2.tar.gz) = 82c063129d0449d3c0bfb9b849db2bee6b226d3d1c31cad68011e2473791dc75
SIZE (cutadapt-3.2.tar.gz) = 292702

4
biology/py-dnaio/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= dnaio
DISTVERSION= 0.4.2
DISTVERSION= 0.5.0 # py-cutadapt 3.2 requires 0.5.x
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -14,7 +14,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
USES= python:3.4+
USES= python:3.6+
USE_PYTHON= autoplist distutils
.include <bsd.port.mk>

6
biology/py-dnaio/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1589846766
SHA256 (dnaio-0.4.2.tar.gz) = fa55a45bfd5d9272409b714158fb3a7de5dceac1034a0af84502c7f503ee84f8
SIZE (dnaio-0.4.2.tar.gz) = 125495
TIMESTAMP = 1612290443
SHA256 (dnaio-0.5.0.tar.gz) = 6d01979159057954a265d81767f8cb26721a6d3a458601a73d1647792a50134c
SIZE (dnaio-0.5.0.tar.gz) = 126321