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Code Issues Releases Activity

Update to version 1.00.a2

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This commit is contained in:
Johann Visagie 2001-07-09 09:57:51 +00:00
parent cc3237c609
commit bb7cb3d31e
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=44955
6 changed files with 46 additions and 8 deletions
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4
biology/py-biopython/Makefile
View File

@ -6,7 +6,7 @@
#
PORTNAME= biopython
PORTVERSION= 1.00.a1
PORTVERSION= 1.00.a2
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/Download/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -62,7 +62,7 @@ EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-build_helper.py
PLIST_OMNIORB= "@comment "
PLIST_FNORB= ""
.elif ${CORBA_ORB} == "orbit"
RUN_DEPENDS+= ${PREFIX}/include/orbit-python/orbit-python.h:${PORTSDIR}/devel/py-orbit
RUN_DEPENDS+= ${LOCALBASE}/include/orbit-python/orbit-python.h:${PORTSDIR}/devel/py-orbit
CORBA_ORBNAME= ORBit
PLIST_OMNIORB= "@comment "
PLIST_FNORB= "@comment "

2
biology/py-biopython/distinfo
View File

@ -1,2 +1,2 @@
MD5 (biopython-1.00a1.tar.gz) = 054baa272e2885e17512964215817119
MD5 (biopython-1.00a2.tar.gz) = 416fb1ab08dfdd7f3d4d75bc0043ace8
MD5 (biopython-corba-0.2.1.tar.gz) = 3d6d3e4570ff2996bef84e08f6fabc25

2
biology/py-biopython/files/extra-patch-build_helper.py
View File

@ -3,7 +3,7 @@ happens only if Fnorb is chosen as CORBA ORB. Since CORBA support itself
is optional in this port, this patch is added to EXTRA_PATCHES only if
necessary.
-- Johann Visagie <johann@egenetics.com>
-- Johann Visagie <wjv@FreeBSD.org>
--- ../biopython-corba-0.2.1/build_helper.py.orig Sun Apr 15 15:19:31 2001

11
biology/py-biopython/files/patch-setup.py Normal file
View File

@ -0,0 +1,11 @@
--- setup.py.orig Fri Jul 6 01:55:51 2001
+++ setup.py Fri Jul 6 18:13:35 2001
@@ -188,7 +188,7 @@
# Martel -- for building parsers
martel_packages = ['Martel']
# a flag to determine if we should install Martel
-INSTALL_MARTEL = 1
+INSTALL_MARTEL = 0
# -- setup the packages list
all_packages = biopython_packages

2
biology/py-biopython/pkg-descr
View File

@ -12,4 +12,4 @@ stable.
Authors: <biopython-dev@biopython.org>
WWW: http://biopython.org/
-- Johann Visagie <johann@egenetics.com>
-- Johann Visagie <wjv@FreeBSD.org>

33
biology/py-biopython/pkg-plist
View File

@ -322,6 +322,15 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/FSSPTools.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/FSSPTools.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/FSSPTools.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/fssp_rec.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/fssp_rec.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP/fssp_rec.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/FastaAlign.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/FastaAlign.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/FastaAlign.pyo
@ -349,6 +358,15 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/Record.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/Record.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/Record.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyo
@ -379,6 +397,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase/Rebase.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyo
@ -406,9 +427,6 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SubsMat/FreqTable.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SubsMat/FreqTable.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SubsMat/FreqTable.pyo
@ -440,6 +458,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/cSVM.so
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/kNN.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/kNN.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/kNN.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/kMeans.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/kMeans.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering/kMeans.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/MultiProc/Scheduler.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/MultiProc/Scheduler.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/MultiProc/Scheduler.pyo
@ -504,6 +528,7 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/UniGene
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Parsers
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/MultiProc
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Clustering
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt
@ -514,9 +539,11 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Data