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add science/libgeodecomp - auto-parallelizing library for computer simulations
LibGeoDecomp (Library for Geometric Decomposition codes) is an auto-parallelizing library for computer simulations. It is specifically targeted computational science applications in the context of supercomputers and heterogeneous systems. The library eases development of such tightly coupled codes by essentially taking over the parallel programming: it handles both, the parallelization itself and parameter tuning. This enables scientists to focus on their simulation code, rather than the technical details of the parallel computer. PR: 213688 Submitted by: Kurt Kanzenbach <kurt@kmk-computers.de> Reviewed by: matthew Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D9390
This commit is contained in:
Nikolai Lifanov
parent
54e90b862c
commit
be3b7a5a79
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=432959
@ -70,6 +70,7 @@
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SUBDIR += lamprop
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SUBDIR += libaec
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SUBDIR += libctl
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SUBDIR += libgeodecomp
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SUBDIR += libghemical
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SUBDIR += libint
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SUBDIR += libkml
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43
science/libgeodecomp/Makefile
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43
science/libgeodecomp/Makefile
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@ -0,0 +1,43 @@
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# Created by: Kurt Kanzenbach <kurt@kmk-computers.de>
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# $FreeBSD$
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PORTNAME= libgeodecomp
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PORTVERSION= 0.4.0
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CATEGORIES= science devel
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MASTER_SITES= http://www.libgeodecomp.org/archive/
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MAINTAINER= kurt@kmk-computers.de
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COMMENT= LibGeoDecomp is an auto-parallelizing library for computer simulations
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LICENSE= BSL
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libboost_system.so:devel/boost-libs libboost_date_time.so:devel/boost-libs \
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libboost_filesystem.so:devel/boost-libs
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USES= cmake:outsource compiler:c++11-lib
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USE_GCC= yes
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USE_LDCONFIG= yes
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CMAKE_ARGS= -DWITH_CUDA:BOOL=FALSE -DWITH_VISIT:BOOL=FALSE \
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-DWITH_HPX:BOOL=FALSE -DWITH_OPENCL:BOOL=FALSE \
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-DWITH_OPENCV:BOOL=FALSE -DWITH_TYPEMAPS=FALSE
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OPTIONS_DEFINE= MPI QT4 SILO SCOTCH
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OPTIONS_DEFAULT= MPI QT4 SILO SCOTCH
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MPI_LIB_DEPENDS= libmpich.so:net/mpich2
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MPI_CMAKE_BOOL= WITH_MPI
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QT4_USE= QT4=corelib,gui,opengl,qmake_build,moc_build,rcc_build,uic_build
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QT4_CMAKE_BOOL= WITH_QT
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SILO_DESC= Enable Silo dependend output
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SILO_LIB_DEPENDS= libsiloh5.so:science/silo
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SILO_CMAKE_BOOL= WITH_SILO
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SCOTCH_DESC= Enable graph partitioning based on Scotch/Scotch-PT
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SCOTCH_BUILD_DEPENDS= ${LOCALBASE}/lib/libscotch.a:cad/scotch
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SCOTCH_CMAKE_BOOL= WITH_SCOTCH
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.include <bsd.port.mk>
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3
science/libgeodecomp/distinfo
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3
science/libgeodecomp/distinfo
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@ -0,0 +1,3 @@
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TIMESTAMP = 1476973737
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SHA256 (libgeodecomp-0.4.0.tar.gz) = f1a4fbc0c04952a148cbe186f36fc9e2307f7b0ecaf6960b56f2135ca3b8fa4e
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SIZE (libgeodecomp-0.4.0.tar.gz) = 1022767
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@ -0,0 +1,16 @@
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--- lib/libflatarray/src/aligned_allocator.hpp.orig 2014-10-28 09:12:48 UTC
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+++ lib/libflatarray/src/aligned_allocator.hpp
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@@ -8,13 +8,7 @@
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#ifndef FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
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#define FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
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-#ifdef __APPLE__
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#include <cstddef>
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-#include <stdlib.h>
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-#else
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-#include <malloc.h>
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-#endif
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-
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#include <memory>
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namespace LibFlatArray {
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11
science/libgeodecomp/files/patch-src_CMakeLists.txt
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11
science/libgeodecomp/files/patch-src_CMakeLists.txt
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@ -0,0 +1,11 @@
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--- src/CMakeLists.txt.orig 2016-10-17 18:06:32 UTC
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+++ src/CMakeLists.txt
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@@ -575,7 +575,7 @@ Version: ${PACKAGE_VERSION}
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Libs: ${INSTALLER_LINK_FLAGS}
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Cflags: -I${CMAKE_INSTALL_PREFIX}/include ${PKG_CONFIG_INCLUDE_FLAGS}
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")
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-install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "${LIB_DIR}/pkgconfig")
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+install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "libdata/pkgconfig")
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set(ConfigPackageLocation lib/cmake/${PACKAGE_NAME})
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10
science/libgeodecomp/pkg-descr
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10
science/libgeodecomp/pkg-descr
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@ -0,0 +1,10 @@
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LibGeoDecomp (Library for Geometric Decomposition codes) is an
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auto-parallelizing library for computer simulations. It is specifically targeted
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computational science applications in the context of supercomputers and
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heterogeneous systems. The library eases development of such tightly coupled
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codes by essentially taking over the parallel programming: it handles both, the
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parallelization itself and parameter tuning. This enables scientists to focus on
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their simulation code, rather than the technical details of the parallel
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computer.
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WWW: http://www.libgeodecomp.org/
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195
science/libgeodecomp/pkg-plist
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195
science/libgeodecomp/pkg-plist
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@ -0,0 +1,195 @@
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include/libflatarray/aggregated_member_size.hpp
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include/libflatarray/aligned_allocator.hpp
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include/libflatarray/api_traits.hpp
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include/libflatarray/coord.hpp
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include/libflatarray/cuda_allocator.hpp
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include/libflatarray/detail/dual_callback_helper.hpp
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include/libflatarray/detail/get_set_instance_functor.hpp
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include/libflatarray/detail/load_save_functor.hpp
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include/libflatarray/detail/macros.hpp
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include/libflatarray/detail/offset.hpp
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include/libflatarray/detail/set_byte_size_functor.hpp
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include/libflatarray/detail/short_vec_avx_float_8.hpp
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include/libflatarray/detail/short_vec_qpx_double_4.hpp
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include/libflatarray/detail/short_vec_sse_double_8.hpp
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include/libflatarray/detail/short_vec_sse_float_16.hpp
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include/libflatarray/detail/short_vec_sse_float_8.hpp
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include/libflatarray/detail/sqrt_reference.hpp
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include/libflatarray/flat_array.hpp
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include/libflatarray/macros.hpp
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include/libflatarray/member_ptr_to_offset.hpp
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include/libflatarray/number_of_members.hpp
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include/libflatarray/short_vec.hpp
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include/libflatarray/soa_accessor.hpp
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include/libflatarray/soa_array.hpp
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include/libflatarray/soa_grid.hpp
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include/libflatarray/testbed/benchmark.hpp
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include/libflatarray/testbed/cpu_benchmark.hpp
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include/libflatarray/testbed/evaluate.hpp
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include/libflatarray/testbed/gpu_benchmark.hpp
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include/libgeodecomp.h
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include/libgeodecomp/communication/mpilayer.h
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include/libgeodecomp/communication/patchlink.h
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include/libgeodecomp/communication/serialization.h
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include/libgeodecomp/communication/typemaps.h
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include/libgeodecomp/config.h
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include/libgeodecomp/geometry/coord.h
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include/libgeodecomp/geometry/coordbox.h
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include/libgeodecomp/geometry/cudaregion.h
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include/libgeodecomp/geometry/fixedcoord.h
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include/libgeodecomp/geometry/floatcoord.h
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include/libgeodecomp/geometry/partitionmanager.h
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include/libgeodecomp/geometry/partitions/checkerboardingpartition.h
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include/libgeodecomp/geometry/partitions/hilbertpartition.h
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include/libgeodecomp/geometry/partitions/hindexingpartition.h
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include/libgeodecomp/geometry/partitions/partition.h
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include/libgeodecomp/geometry/partitions/ptscotchpartition.h
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include/libgeodecomp/geometry/partitions/recursivebisectionpartition.h
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include/libgeodecomp/geometry/partitions/scotchpartition.h
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include/libgeodecomp/geometry/partitions/spacefillingcurve.h
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include/libgeodecomp/geometry/partitions/stripingpartition.h
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include/libgeodecomp/geometry/partitions/zcurvepartition.h
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include/libgeodecomp/geometry/region.h
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include/libgeodecomp/geometry/regionstreakiterator.h
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include/libgeodecomp/geometry/stencils.h
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include/libgeodecomp/geometry/streak.h
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include/libgeodecomp/geometry/topologies.h
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include/libgeodecomp/geometry/voronoimesher.h
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include/libgeodecomp/io/asciiwriter.h
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include/libgeodecomp/io/bovwriter.h
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include/libgeodecomp/io/collectingwriter.h
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include/libgeodecomp/io/hpxwritercollector.h
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include/libgeodecomp/io/hpxwritersink.h
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include/libgeodecomp/io/hpxwritersinkserver.h
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include/libgeodecomp/io/imagepainter.h
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include/libgeodecomp/io/initializer.h
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include/libgeodecomp/io/ioexception.h
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include/libgeodecomp/io/logger.h
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include/libgeodecomp/io/memorywriter.h
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include/libgeodecomp/io/mockinitializer.h
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include/libgeodecomp/io/mocksteerer.h
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include/libgeodecomp/io/mockwriter.h
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include/libgeodecomp/io/mpiio.h
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include/libgeodecomp/io/mpiioinitializer.h
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include/libgeodecomp/io/mpiiowriter.h
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include/libgeodecomp/io/parallelmemorywriter.h
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include/libgeodecomp/io/parallelmpiiowriter.h
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include/libgeodecomp/io/paralleltestwriter.h
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include/libgeodecomp/io/parallelwriter.h
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include/libgeodecomp/io/plotter.h
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include/libgeodecomp/io/ppmwriter.h
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include/libgeodecomp/io/qtwidgetwriter.h
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include/libgeodecomp/io/remotesteerer.h
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include/libgeodecomp/io/serialbovwriter.h
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include/libgeodecomp/io/silowriter.h
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include/libgeodecomp/io/simplecellplotter.h
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include/libgeodecomp/io/simpleinitializer.h
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include/libgeodecomp/io/steerer.h
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include/libgeodecomp/io/testinitializer.h
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include/libgeodecomp/io/teststeerer.h
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include/libgeodecomp/io/testwriter.h
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include/libgeodecomp/io/tracingwriter.h
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include/libgeodecomp/io/visitwriter.h
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include/libgeodecomp/io/writer.h
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include/libgeodecomp/loadbalancer/biasbalancer.h
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include/libgeodecomp/loadbalancer/loadbalancer.h
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include/libgeodecomp/loadbalancer/mockbalancer.h
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include/libgeodecomp/loadbalancer/noopbalancer.h
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include/libgeodecomp/loadbalancer/oozebalancer.h
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include/libgeodecomp/loadbalancer/randombalancer.h
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include/libgeodecomp/loadbalancer/tracingbalancer.h
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include/libgeodecomp/misc/apitraits.h
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include/libgeodecomp/misc/chronometer.h
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include/libgeodecomp/misc/clonable.h
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include/libgeodecomp/misc/color.h
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include/libgeodecomp/misc/cudautil.h
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include/libgeodecomp/misc/fpscounter.h
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include/libgeodecomp/misc/math.h
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include/libgeodecomp/misc/mpitest.h
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include/libgeodecomp/misc/nonpodtestcell.h
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include/libgeodecomp/misc/optimizer.h
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include/libgeodecomp/misc/palette.h
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include/libgeodecomp/misc/patternoptimizer.h
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include/libgeodecomp/misc/quickpalette.h
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include/libgeodecomp/misc/random.h
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include/libgeodecomp/misc/scopedtimer.h
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include/libgeodecomp/misc/simplexoptimizer.h
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include/libgeodecomp/misc/simulationfactory.h
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include/libgeodecomp/misc/simulationparameters.h
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include/libgeodecomp/misc/stdcontaineroverloads.h
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include/libgeodecomp/misc/stringops.h
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include/libgeodecomp/misc/stringvec.h
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include/libgeodecomp/misc/tempfile.h
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include/libgeodecomp/misc/testcell.h
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include/libgeodecomp/misc/testhelper.h
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include/libgeodecomp/parallelization/cacheblockingsimulator.h
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include/libgeodecomp/parallelization/cudasimulator.h
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include/libgeodecomp/parallelization/distributedsimulator.h
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include/libgeodecomp/parallelization/hiparsimulator.h
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include/libgeodecomp/parallelization/hiparsimulator/commonstepper.h
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include/libgeodecomp/parallelization/hiparsimulator/cudastepper.h
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include/libgeodecomp/parallelization/hiparsimulator/multicorestepper.h
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include/libgeodecomp/parallelization/hiparsimulator/offsethelper.h
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include/libgeodecomp/parallelization/hiparsimulator/openclstepper.h
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include/libgeodecomp/parallelization/hiparsimulator/parallelwriteradapter.h
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include/libgeodecomp/parallelization/hiparsimulator/steereradapter.h
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include/libgeodecomp/parallelization/hiparsimulator/stepper.h
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include/libgeodecomp/parallelization/hiparsimulator/updategroup.h
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include/libgeodecomp/parallelization/hiparsimulator/vanillastepper.h
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include/libgeodecomp/parallelization/hpxsimulator.h
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include/libgeodecomp/parallelization/hpxsimulator/createupdategroups.h
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include/libgeodecomp/parallelization/hpxsimulator/hpxstepper.h
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include/libgeodecomp/parallelization/hpxsimulator/patchlink.h
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include/libgeodecomp/parallelization/hpxsimulator/updategroup.h
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include/libgeodecomp/parallelization/hpxsimulator/updategroupserver.h
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include/libgeodecomp/parallelization/mocksimulator.h
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include/libgeodecomp/parallelization/monolithicsimulator.h
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include/libgeodecomp/parallelization/serialsimulator.h
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include/libgeodecomp/parallelization/simulator.h
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include/libgeodecomp/parallelization/stripingsimulator.h
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include/libgeodecomp/storage/boxcell.h
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include/libgeodecomp/storage/collectioninterface.h
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include/libgeodecomp/storage/containercell.h
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include/libgeodecomp/storage/coordmap.h
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include/libgeodecomp/storage/cudaarray.h
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include/libgeodecomp/storage/cudagrid.h
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include/libgeodecomp/storage/dataaccessor.h
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include/libgeodecomp/storage/defaultfilter.h
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include/libgeodecomp/storage/displacedgrid.h
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include/libgeodecomp/storage/filter.h
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include/libgeodecomp/storage/filterbase.h
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include/libgeodecomp/storage/fixedarray.h
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include/libgeodecomp/storage/fixedneighborhood.h
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include/libgeodecomp/storage/grid.h
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include/libgeodecomp/storage/gridbase.h
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include/libgeodecomp/storage/gridtypeselector.h
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include/libgeodecomp/storage/gridvecconv.h
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include/libgeodecomp/storage/image.h
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include/libgeodecomp/storage/linepointerassembly.h
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include/libgeodecomp/storage/linepointerneighborhood.h
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include/libgeodecomp/storage/linepointerupdatefunctor.h
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include/libgeodecomp/storage/meshlessadapter.h
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include/libgeodecomp/storage/mockpatchaccepter.h
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include/libgeodecomp/storage/multicontainercell.h
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include/libgeodecomp/storage/neighborhoodadapter.h
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include/libgeodecomp/storage/neighborhooditerator.h
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include/libgeodecomp/storage/patchaccepter.h
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include/libgeodecomp/storage/patchbuffer.h
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include/libgeodecomp/storage/patchbufferfixed.h
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include/libgeodecomp/storage/patchprovider.h
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include/libgeodecomp/storage/pointerneighborhood.h
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include/libgeodecomp/storage/selector.h
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include/libgeodecomp/storage/sellcsigmasparsematrixcontainer.h
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include/libgeodecomp/storage/serializationbuffer.h
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include/libgeodecomp/storage/simplefilter.h
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include/libgeodecomp/storage/soagrid.h
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include/libgeodecomp/storage/unstructuredgrid.h
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include/libgeodecomp/storage/updatefunctor.h
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include/libgeodecomp/storage/updatefunctortestbase.h
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include/libgeodecomp/storage/vanillaupdatefunctor.h
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lib/cmake/libgeodecomp/libgeodecomp-targets-%%CMAKE_BUILD_TYPE%%.cmake
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lib/cmake/libgeodecomp/libgeodecomp-targets.cmake
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lib/cmake/libgeodecomp/libgeodecompConfig.cmake
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lib/cmake/libgeodecomp/libgeodecompConfigVersion.cmake
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lib/libgeodecomp.so
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libdata/pkgconfig/libgeodecomp.pc
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