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Code Issues Releases Activity

Update to 3.65.

Browse Source 
PR:		ports/92182
Submitted by:	"Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:	dbader@ece.unm.edu (maintainer, timeout 14 days)
This commit is contained in:
Sam Lawrance 2006-02-08 14:45:45 +00:00
parent 830c9d1598
commit c6f127a070
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=155521
3 changed files with 17 additions and 73 deletions
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41
biology/phylip/Makefile
View File

@ -6,8 +6,7 @@
#
PORTNAME= phylip
PORTVERSION= 3.6
PORTEPOCH= 1
PORTVERSION= 3.65
CATEGORIES= biology
MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/phylip/ \
http://bioinformatics.weizmann.ac.il/software/linkage_and_mapping/phylip/ \
@ -17,6 +16,7 @@ MASTER_SITE_SUBDIR= distfiles
MAINTAINER= dbader@ece.unm.edu
COMMENT= A Phylogeny Inference Package
WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}
USE_XLIB= yes
BUILD_WRKSRC= ${WRKSRC}/src
@ -24,36 +24,23 @@ MAKE_ARGS= CC="${CC} ${CFLAGS}" \
DC="${CC} -DX -I${X11BASE}/include ${CFLAGS}" \
GLIBS="-L${X11BASE}/lib -lX11 -lm"
BINARIES= clique consense contml contrast dnacomp dnadist dnainvar \
dnaml dnamlk dnamove dnapars dnapenny dollop dolmove \
dolpenny drawgram drawtree factor fitch gendist kitsch \
mix move neighbor pars penny proml promlk protdist \
protpars restdist restml retree seqboot treedist
DOCFILES= clique.html consense.html contchar.html contml.html \
contrast.html discrete.html distance.html dnacomp.html \
dnadist.html dnainvar.html dnaml.html dnamlk.html \
dnamove.html dnapars.html dnapenny.html dollop.html \
dolmove.html dolpenny.html draw.html drawgram.html \
drawtree.html factor.html fitch.html gendist.html \
kitsch.html main.html mix.html move.html neighbor.html \
pars.html penny.html phylip.gif proml.html promlk.html \
protdist.html protpars.html restdist.html restml.html \
retree.html seqboot.html sequence.html treedist.html
FONTFILES= font1 font2 font3 font4 font5 font6
PORTDOCS= *
do-install:
.for f in ${BINARIES}
${INSTALL_PROGRAM} ${BUILD_WRKSRC}/${f} ${PREFIX}/bin
.endfor
@cd ${BUILD_WRKSRC} && ${MAKE} install
@cd ${WRKSRC}/exe && \
${FIND} . -not -type d -not -name 'font*' -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \;
${MKDIR} ${DATADIR}
.for font in ${FONTFILES}
${INSTALL_DATA} ${BUILD_WRKSRC}/${font} ${DATADIR}
.endfor
@cd ${WRKSRC}/exe && \
${FIND} . -not -type d -name 'font*' -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \;
post-install:
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR}
.for f in ${DOCFILES}
${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/${f} ${DOCSDIR}
.endfor
@cd ${WRKSRC}/doc && \
${FIND} . -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
.endif
.include <bsd.port.mk>

6
biology/phylip/distinfo
View File

@ -1,3 +1,3 @@
MD5 (phylip-3.6.tar.gz) = ff0ded7756db29d948f355ed5cc020cc
SHA256 (phylip-3.6.tar.gz) = 2e5ccf074ae33d17302afc75dd0533a189502bb2b83ed361ccc345cad09a142b
SIZE (phylip-3.6.tar.gz) = 855538
MD5 (phylip-3.65.tar.gz) = c89a92c8692faaba4310b69b2d89bc33
SHA256 (phylip-3.65.tar.gz) = 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528
SIZE (phylip-3.65.tar.gz) = 1036976

43
biology/phylip/pkg-plist
View File

@ -33,48 +33,6 @@ bin/restml
bin/retree
bin/seqboot
bin/treedist
%%PORTDOCS%%%%DOCSDIR%%/clique.html
%%PORTDOCS%%%%DOCSDIR%%/consense.html
%%PORTDOCS%%%%DOCSDIR%%/contchar.html
%%PORTDOCS%%%%DOCSDIR%%/contml.html
%%PORTDOCS%%%%DOCSDIR%%/contrast.html
%%PORTDOCS%%%%DOCSDIR%%/discrete.html
%%PORTDOCS%%%%DOCSDIR%%/distance.html
%%PORTDOCS%%%%DOCSDIR%%/dnacomp.html
%%PORTDOCS%%%%DOCSDIR%%/dnadist.html
%%PORTDOCS%%%%DOCSDIR%%/dnainvar.html
%%PORTDOCS%%%%DOCSDIR%%/dnaml.html
%%PORTDOCS%%%%DOCSDIR%%/dnamlk.html
%%PORTDOCS%%%%DOCSDIR%%/dnamove.html
%%PORTDOCS%%%%DOCSDIR%%/dnapars.html
%%PORTDOCS%%%%DOCSDIR%%/dnapenny.html
%%PORTDOCS%%%%DOCSDIR%%/dollop.html
%%PORTDOCS%%%%DOCSDIR%%/dolmove.html
%%PORTDOCS%%%%DOCSDIR%%/dolpenny.html
%%PORTDOCS%%%%DOCSDIR%%/draw.html
%%PORTDOCS%%%%DOCSDIR%%/drawgram.html
%%PORTDOCS%%%%DOCSDIR%%/drawtree.html
%%PORTDOCS%%%%DOCSDIR%%/factor.html
%%PORTDOCS%%%%DOCSDIR%%/fitch.html
%%PORTDOCS%%%%DOCSDIR%%/gendist.html
%%PORTDOCS%%%%DOCSDIR%%/kitsch.html
%%PORTDOCS%%%%DOCSDIR%%/main.html
%%PORTDOCS%%%%DOCSDIR%%/mix.html
%%PORTDOCS%%%%DOCSDIR%%/move.html
%%PORTDOCS%%%%DOCSDIR%%/neighbor.html
%%PORTDOCS%%%%DOCSDIR%%/pars.html
%%PORTDOCS%%%%DOCSDIR%%/penny.html
%%PORTDOCS%%%%DOCSDIR%%/phylip.gif
%%PORTDOCS%%%%DOCSDIR%%/proml.html
%%PORTDOCS%%%%DOCSDIR%%/promlk.html
%%PORTDOCS%%%%DOCSDIR%%/protdist.html
%%PORTDOCS%%%%DOCSDIR%%/protpars.html
%%PORTDOCS%%%%DOCSDIR%%/restdist.html
%%PORTDOCS%%%%DOCSDIR%%/restml.html
%%PORTDOCS%%%%DOCSDIR%%/retree.html
%%PORTDOCS%%%%DOCSDIR%%/seqboot.html
%%PORTDOCS%%%%DOCSDIR%%/sequence.html
%%PORTDOCS%%%%DOCSDIR%%/treedist.html
%%DATADIR%%/font1
%%DATADIR%%/font2
%%DATADIR%%/font3
@ -82,4 +40,3 @@ bin/treedist
%%DATADIR%%/font5
%%DATADIR%%/font6
@dirrm %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%