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biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0

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This commit is contained in:
Yuri Victorovich 2021-08-25 12:54:09 -07:00
parent 5c2e32c94f
commit cc5fdc14d9
2 changed files with 21 additions and 10 deletions
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25
biology/ncbi-cxx-toolkit/Makefile
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@ -1,7 +1,7 @@
PORTNAME= ncbi-cxx-toolkit
DISTVERSION= 22_0_0
DISTVERSION= 25_0_0
CATEGORIES= biology science devel
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Aug_18_2021/
DISTNAME= ncbi_cxx--${DISTVERSION}
MAINTAINER= yuri@FreeBSD.org
@ -10,25 +10,36 @@ COMMENT= NCBI C++ Toolkit
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
LIB_DEPENDS= liblmdb.so:databases/lmdb \
LIB_DEPENDS= libcdd.so:math/cddlib \
liblmdb.so:databases/lmdb \
libpcre.so:devel/pcre
RUN_DEPENDS= bash:shells/bash
USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg
SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py
USE_XORG= x11 xpm
SHEBANG_FILES= src/app/blast/get_species_taxids.sh
SHEBANG_GLOB= *.pl *.py
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-debug --with-dll --without-static
CONFIGURE_ARGS= --without-debug --with-dll --without-static \
--without-vdb
WRKSRC= ${WRKDIR}/public-${DISTVERSION:S/_/./g}-2021-08-18-11-21-29
post-install:
# strip
@${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD}
@${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD}
# remove an empty directory
@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
#@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
@${RMDIR} \
${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \
${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms
# remove the conflicting file
@${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so
@${RM} \
${STAGEDIR}${PREFIX}/lib/libcdd.so \
${STAGEDIR}${PREFIX}/lib/liblmdb.so
# autoplist: thousands of files
@cd ${STAGEDIR}${PREFIX} && \
${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \

6
biology/ncbi-cxx-toolkit/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1600993142
SHA256 (ncbi_cxx--22_0_0.tar.gz) = ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f
SIZE (ncbi_cxx--22_0_0.tar.gz) = 56042079
TIMESTAMP = 1629878632
SHA256 (ncbi_cxx--25_0_0.tar.gz) = 0158971349839b69ea96b3b88db774ac1692befd9910c040a00186e841ef5ed5
SIZE (ncbi_cxx--25_0_0.tar.gz) = 95801019