New port: science/sparta: Gas simulator: SPARTA DSMC software package

svn path=/head/; revision=484789

science/Makefile

@@ -281,6 +281,7 @@
     SUBDIR += simint
     SUBDIR += simlib
     SUBDIR += simsmith
+    SUBDIR += sparta
     SUBDIR += spglib
     SUBDIR += step
     SUBDIR += step-kde4

science/sparta/Makefile

@@ -0,0 +1,46 @@
+# $FreeBSD$
+
+PORTNAME=	sparta
+PORTVERSION=	${GH_TAGNAME:C/([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\3.\2.\1/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/}
+CATEGORIES=	science
+PKGNAMESUFFIX=	-dsmc # Direct Simulation Monte Carlo
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Gas simulator: SPARTA DSMC software package
+
+LICENSE=	GPLv2
+LICENSE_FILE=	${WRKSRC}/../LICENSE
+
+BUILD_DEPENDS=	bash:shells/bash
+
+USES=		gmake localbase
+USE_GITHUB=	yes
+GH_TAGNAME=	29Oct2018
+
+CXXFLAGS+=	-DSPARTA_UNORDERED_MAP
+
+WRKSRC_SUBDIR=	src
+MAKE_ARGS=	CC=${CXX} CCFLAGS="${CXXFLAGS}" LINK=${CXX} LINKFLAGS="${LDFLAGS}" mode=exe
+
+OPTIONS_SINGLE=			PARALLEL
+OPTIONS_SINGLE_PARALLEL=	SERIAL MPI
+OPTIONS_DEFAULT=		MPI
+PARALLEL_DESC=			Parallelization
+
+SERIAL_DESC=			Serial: no parallelization
+SERIAL_ALL_TARGET=		serial
+SERIAL_PLIST_FILES=		bin/spa_serial
+
+MPI_ALL_TARGET=			mpi
+MPI_PLIST_FILES=		bin/spa_mpi
+MPI_CXXFLAGS=			-I${LOCALBASE}/mpi/openmpi/include
+MPI_LDFLAGS=			${LOCALBASE}/mpi/openmpi/lib/libmpi.so -Wl,-rpath=${LOCALBASE}/mpi/openmpi/lib
+MPI_LIB_DEPENDS=		libmpi.so:net/openmpi
+
+post-patch:
+	@${REINPLACE_CMD} 's|SHELL = /bin/bash|SHELL = ${LOCALBASE}/bin/bash|' ${WRKSRC}/Makefile
+
+do-install:
+	${INSTALL_PROGRAM} ${WRKSRC}/spa_* ${STAGEDIR}${PREFIX}/bin/
+
+.include <bsd.port.mk>

science/sparta/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1541984571
+SHA256 (sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz) = 769461c0538727ee06bef72762c49eb496c4f8dd8d33adcb4e9e85bd4bca8496
+SIZE (sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz) = 19956946

science/sparta/files/patch-STUBS_mpi.c

@@ -0,0 +1,11 @@
+--- STUBS/mpi.c.orig	2018-11-12 01:31:19 UTC
++++ STUBS/mpi.c
+@@ -20,7 +20,7 @@
+ #include <stdio.h>
+ #include <stdint.h>
+ #include <sys/time.h>
+-#include <mpi.h>
++#include "mpi.h"
+ 
+ /* data structure for double/int */
+ 

science/sparta/pkg-descr

@@ -0,0 +1,15 @@
+SPARTA is a parallel DSMC code for performing simulations of low-density gases
+in 2D or 3D. Particles advect through a hierarchical Cartesian grid that
+overlays the simulation box. The grid is used to group particles by grid cell
+for purposes of performing collisions and chemistry. Physical objects with
+triangulated surfaces can be embedded in the grid, creating cut and split grid
+cells. The grid is also used to efficiently find particle/surface collisions.
+
+SPARTA runs on single processors or in parallel using message-passing techniques
+and a spatial-decomposition of the simulation domain. The code is designed to be
+easy to modify or extend with new functionality.
+
+SPARTA was developed at Sandia National Laboratories, a US Department of Energy
+(DOE) laboratory.
+
+WWW: https://sparta.sandia.gov/