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- Update to 2007.06.15.1339

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PR:		113887
Submitted by:	Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
This commit is contained in:
Martin Wilke 2007-06-21 12:33:48 +00:00
parent 013c68615b
commit d39bba8d0f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=194000
8 changed files with 121 additions and 29 deletions
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16
science/afni/Makefile
View File

@ -16,8 +16,7 @@
# Makefile.BSD, which is included in the source distribution.
PORTNAME= afni
PORTVERSION= 2007.04.18.1830
PORTREVISION= 1
PORTVERSION= 2007.06.15.1339
CATEGORIES= science biology graphics
MASTER_SITES= http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://afni.nimh.nih.gov/pub/dist/tgz/
@ -35,15 +34,13 @@ RUN_DEPENDS= cjpeg:${PORTSDIR}/graphics/jpeg \
ppmtogif:${PORTSDIR}/graphics/netpbm \
endian:${PORTSDIR}/sysutils/endian
BROKEN= Does not compile
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
BROKEN= Does not compile on sparc64: "undefined reference to '_mcount'"
.endif
USE_GL= glw
USE_GL= glw glu
USE_GETTEXT= yes
USE_GMAKE= yes
USE_ICONV= yes
@ -80,6 +77,8 @@ post-extract:
.for f in ${X11R6_FILES}
@${REINPLACE_CMD} -e 's|/usr/X11R6|$${X11BASE}|g' ${WRKSRC}/${f}
.endfor
@${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
@${REINPLACE_CMD} "s|%%PREFIX%%|${PREFIX}|g" ${WRKDIR}/afni.1
post-build:
${MKDIR} ${STAGE}/bin \
@ -90,10 +89,6 @@ post-build:
${STAGE}/doc \
${STAGE}/share
${MV} ${INSTALL_WRKSRC}/libf2c.a \
${INSTALL_WRKSRC}/cjpeg \
${INSTALL_WRKSRC}/djpeg \
${INSTALL_WRKSRC}/mpeg_encode \
${INSTALL_WRKSRC}/whirlgif \
${STAGE}/trash
${MV} ${INSTALL_WRKSRC}/*.a \
${INSTALL_WRKSRC}/*.so \
@ -106,6 +101,7 @@ post-build:
${STAGE}/include
${MV} ${INSTALL_WRKSRC}/README* \
${STAGE}/doc
${MV} ${INSTALL_WRKSRC}/abut ${INSTALL_WRKSRC}/afni_abut
for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
${MV} $${binary} ${STAGE}/bin ; \
done
@ -121,7 +117,7 @@ do-install:
${INSTALL_SCRIPT} ${STAGE}/scripts/* ${PREFIX}/bin
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3c-May0806/* ${DATADIR}
${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
${INSTALL_MAN} ${WRKDIR}/afni.1 ${PREFIX}/man/man1
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${STAGE}/doc/* ${DOCSDIR}

30
science/afni/distinfo
View File

@ -1,15 +1,15 @@
MD5 (AFNI-2007.04.18.1830/afni_src.tgz) = 90ecae8727cadc6172517bc7149be67e
SHA256 (AFNI-2007.04.18.1830/afni_src.tgz) = 53796de972179f122ab7c557bf29d3511ed113119d04707e16b0766763f49c21
SIZE (AFNI-2007.04.18.1830/afni_src.tgz) = 11283995
MD5 (AFNI-2007.04.18.1830/afni.1) = 80cc1f1c6ca0ef59a3032ad63abfbdd5
SHA256 (AFNI-2007.04.18.1830/afni.1) = 647815326aa676d005fa15de116a6f046b486530aa50a3100d8b29c11da8aaf7
SIZE (AFNI-2007.04.18.1830/afni.1) = 1702
MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 159912
MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 1750
MD5 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
SHA256 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
SIZE (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = 2652278
MD5 (AFNI-2007.06.15.1339/afni_src.tgz) = 19f4c9e5dac9459b14c40475879f1dda
SHA256 (AFNI-2007.06.15.1339/afni_src.tgz) = b4778ada0afb603f4a104ee2448792d5f3b0eea844defda8dd9141002c98a433
SIZE (AFNI-2007.06.15.1339/afni_src.tgz) = 11331933
MD5 (AFNI-2007.06.15.1339/afni.1) = 02708ca46c60d6774af4796535e263ed
SHA256 (AFNI-2007.06.15.1339/afni.1) = f134d1f869b1dfd618c61e58fd24b9c4dcfea9c25bc5b1c26dbbb141719cd6f8
SIZE (AFNI-2007.06.15.1339/afni.1) = 1667
MD5 (AFNI-2007.06.15.1339/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
SHA256 (AFNI-2007.06.15.1339/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
SIZE (AFNI-2007.06.15.1339/TTatlas+tlrc.BRIK.gz) = 159912
MD5 (AFNI-2007.06.15.1339/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
SHA256 (AFNI-2007.06.15.1339/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
SIZE (AFNI-2007.06.15.1339/TTatlas+tlrc.HEAD) = 1750
MD5 (AFNI-2007.06.15.1339/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
SHA256 (AFNI-2007.06.15.1339/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
SIZE (AFNI-2007.06.15.1339/CA_EZ_v1.3c-May0806.tgz) = 2652278

2
science/afni/files/Makefile.FreeBSD_PORT
View File

@ -45,7 +45,7 @@ CC? = cc
LD? = ${CC}
CCDEBS = -DAFNI_DEBUG -DIMSEQ_DEBUG -DDISPLAY_DEBUG -DTHD_DEBUG
CEXTRA = -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE
CEXTRA = -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA
ifeq (${ARCH}, amd64)
CEXTRA += -DPIC -fPIC
endif

11
science/afni/files/patch-Makefile.INCLUDE Normal file
View File

@ -0,0 +1,11 @@
--- Makefile.INCLUDE.orig Fri Apr 27 15:03:08 2007
+++ Makefile.INCLUDE Fri Apr 27 15:03:29 2007
@@ -41,7 +41,7 @@
## AFNI package, but included because they are useful. Some of
## them are Open Source programs, not from the AFNI group at all.
-EXTRAS = cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv $(EXPROGS)
+EXTRAS = myget Xphace rmz aiv $(EXPROGS)
# mpegtoppm in above list

53
science/afni/files/patch-SUMA-SUMA_display.c Normal file
View File

@ -0,0 +1,53 @@
--- SUMA/SUMA_display.c.orig Wed Jun 6 12:42:06 2007
+++ SUMA/SUMA_display.c Wed Jun 6 12:45:54 2007
@@ -1854,22 +1854,14 @@
- #ifdef SUMA_MOTIF_GLXAREA
- /* Step 4. */
- SUMAg_SVv[ic].X->FORM = XmCreateForm(SUMAg_SVv[ic].X->TOPLEVEL, "form", NULL, 0);
- XtManageChild(SUMAg_SVv[ic].X->FORM);
- SUMAg_SVv[ic].X->FRAME = XmCreateFrame(SUMAg_SVv[ic].X->FORM, "frame", NULL, 0);
- XtVaSetValues(SUMAg_SVv[ic].X->FRAME,
- XmNbottomAttachment, XmATTACH_FORM,
- XmNtopAttachment, XmATTACH_FORM,
- XmNleftAttachment, XmATTACH_FORM,
- XmNrightAttachment, XmATTACH_FORM,
- NULL);
- XtManageChild(SUMAg_SVv[ic].X->FRAME);
-
- /* Step 5. */
SUMAg_SVv[ic].X->CMAP = SUMA_getShareableColormap(&(SUMAg_SVv[ic]));
+ /* create a frame to put glxarea in */
+ SUMAg_SVv[ic].X->FRAME = XmCreateFrame (mainw, "frame", NULL, 0);
+ XtManageChild(SUMAg_SVv[ic].X->FRAME);
+
+ #ifdef SUMA_MOTIF_GLXAREA
+ SUMA_LH("MOTIF Drawing Area");
/* Step 6. */
/* glwMDrawingAreaWidgetClass requires libMesaGLwM.a */
SUMAg_SVv[ic].X->GLXAREA = XtVaCreateManagedWidget("glxarea",
@@ -1878,20 +1870,13 @@
XtNcolormap, SUMAg_SVv[ic].X->CMAP,
NULL);
#else
- /* Step 4-6. */
- SUMAg_SVv[ic].X->CMAP = SUMA_getShareableColormap(&(SUMAg_SVv[ic]));
-
- /* create a frame to put glxarea in */
- SUMAg_SVv[ic].X->FRAME = XmCreateFrame (mainw, "frame", NULL, 0);
- XtManageChild(SUMAg_SVv[ic].X->FRAME);
-
+ SUMA_LH("GL Drawing Area");
/* glwDrawingAreaWidgetClass requires libMesaGLw.a */
SUMAg_SVv[ic].X->GLXAREA = XtVaCreateManagedWidget("glxarea",
glwDrawingAreaWidgetClass, SUMAg_SVv[ic].X->FRAME,
GLwNvisualInfo, SUMAg_SVv[ic].X->VISINFO,
XtNcolormap, SUMAg_SVv[ic].X->CMAP,
NULL);
-
#endif

26
science/afni/files/patch-SUMA-SUMA_xColBar.c Normal file
View File

@ -0,0 +1,26 @@
--- SUMA/SUMA_xColBar.c.orig Wed Jun 6 12:42:16 2007
+++ SUMA/SUMA_xColBar.c Wed Jun 6 12:43:42 2007
@@ -4087,6 +4087,15 @@
NULL);
/* open me a glxarea */
+ #ifdef SUMA_MOTIF_GLXAREA
+ SO->SurfCont->cmp_ren->cmap_wid = XtVaCreateManagedWidget("glxarea",
+ glwMDrawingAreaWidgetClass, rcc2,
+ GLwNvisualInfo, SUMAg_SVv[0].X->VISINFO,
+ XtNcolormap, SUMAg_SVv[0].X->CMAP,
+ XmNwidth, SUMA_CMAP_WIDTH,
+ XmNheight, SUMA_CMAP_HEIGHT,
+ NULL);
+ #else
SO->SurfCont->cmp_ren->cmap_wid = XtVaCreateManagedWidget("glxarea",
glwDrawingAreaWidgetClass, rcc2,
GLwNvisualInfo, SUMAg_SVv[0].X->VISINFO,
@@ -4094,6 +4103,7 @@
XmNwidth, SUMA_CMAP_WIDTH,
XmNheight, SUMA_CMAP_HEIGHT,
NULL);
+ #endif
XtManageChild (rcc2);

5
science/afni/pkg-message
View File

@ -13,5 +13,8 @@ http://afni.nimh.nih.gov.
For large 3dDeconvolve analyses, you may need to increase the shared
memory limit on your system. For instructions, visit
http://www.neuro.mcw.edu/~bacon/FreeBSD_MRI/
http://www.neuro.mcw.edu/~bacon/Ports/FreeBSD/shared_mem.html
The program "abut" has been renamed "afni_abut" to resolve a collision
with the unixstat port.
=============================================================================

7
science/afni/pkg-plist
View File

@ -69,6 +69,7 @@ bin/3dMedianFilter
bin/3dNLfim
bin/3dNotes
bin/3dOverlap
bin/3dPAR2AFNI.pl
bin/3dROIstats
bin/3dRegAna
bin/3dRowFillin
@ -209,9 +210,9 @@ bin/SurfToSurf
bin/SurfaceMetrics
bin/Vecwarp
bin/Xphace
bin/abut
bin/adwarp
bin/afni
bin/afni_abut
bin/afni_base.py
bin/afni_proc.py
bin/afni_util.py
@ -281,7 +282,6 @@ bin/whereami
include/afni/3ddata.h
include/afni/afni_environ.h
include/afni/afni_warp.h
include/afni/cdflib.h
include/afni/coxplot.h
include/afni/cs.h
include/afni/cs_sort_template.h
@ -406,6 +406,7 @@ lib/afni/plug_zeropad.so
%%DATADIR%%/face_asanders.jpg
%%DATADIR%%/face_ashackman.jpg
%%DATADIR%%/face_athomas.jpg
%%DATADIR%%/face_aysesaygin.jpg
%%DATADIR%%/face_bandettini.jpg
%%DATADIR%%/face_barbaracd.jpg
%%DATADIR%%/face_bargall.jpg
@ -422,6 +423,7 @@ lib/afni/plug_zeropad.so
%%DATADIR%%/face_claudio.jpg
%%DATADIR%%/face_cmoritz.jpg
%%DATADIR%%/face_cmyers.jpg
%%DATADIR%%/face_craigstark.jpg
%%DATADIR%%/face_cscholl.jpg
%%DATADIR%%/face_csenior.jpg
%%DATADIR%%/face_cwettig.jpg
@ -469,6 +471,7 @@ lib/afni/plug_zeropad.so
%%DATADIR%%/face_lincoln1.jpg
%%DATADIR%%/face_lincoln2.jpg
%%DATADIR%%/face_lindachao.jpg
%%DATADIR%%/face_lindathede.jpg
%%DATADIR%%/face_lisaeyler.jpg
%%DATADIR%%/face_lizyoder.jpg
%%DATADIR%%/face_ljcox.jpg