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biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89

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Add the pull request that fixes the boost::thread build failures.
This commit is contained in:
Yuri Victorovich 2020-03-31 06:42:22 +00:00
parent 5c3d7001b7
commit d3d451a22f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=529953
3 changed files with 10 additions and 17 deletions
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8
biology/cufflinks/Makefile
View File

@ -2,11 +2,13 @@
PORTNAME= cufflinks
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.1-83
DISTVERSIONSUFFIX= -gb4fa050
PORTREVISION= 2
DISTVERSION= 2.2.1-89
DISTVERSIONSUFFIX= -gdc3b0cb
CATEGORIES= biology
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/
PATCHFILES+= ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github.com/cole-trapnell-lab/cufflinks/pull/127
MAINTAINER= yuri@FreeBSD.org
COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc

8
biology/cufflinks/distinfo
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@ -1,3 +1,5 @@
TIMESTAMP = 1558818522
SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 0b26b02c080115d4262d466503bdc43db5ff5583d8122e77355782dc7cbe0522
SIZE (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 8804967
TIMESTAMP = 1585636520
SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 3947a7266b4f58a92b3944b8e205c8875a7c0ce9ea19b394ea82ff77b91999be
SIZE (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 8807044
SHA256 (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = d64446bab1b683dbdb51b33992694bbbc6511aa4eacd2b95812da75e090dff47
SIZE (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = 3779

11
biology/cufflinks/files/patch-src_biascorrection.h
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@ -1,11 +0,0 @@
--- src/biascorrection.h.orig 2019-05-25 21:22:56 UTC
+++ src/biascorrection.h
@@ -15,7 +15,7 @@
#include <vector>
#include <list>
#include <string>
-#include <boost/tr1/unordered_map.hpp>
+#include <boost/unordered_map.hpp>
#include <boost/thread.hpp>
#include "common.h"