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Code Issues Releases Activity

biology/hyphy: Update to 2.4.32

Browse Source 
https://github.com/veg/hyphy/releases/tag/2.5.32

Port changes:
- Remove USES=ssl since it's an indirect dependency from curl
- Remove patch that was upstreamed
This commit is contained in:
Joseph Mingrone 2021-08-20 10:52:29 -03:00
parent e8b6826106
commit dab99da055
No known key found for this signature in database
GPG Key ID: 36A40C83B0D6EF9E
4 changed files with 6 additions and 32 deletions
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4
biology/hyphy/Makefile
View File

@ -1,5 +1,5 @@
PORTNAME= hyphy
DISTVERSION= 2.5.31
DISTVERSION= 2.5.32
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@ -12,7 +12,7 @@ ONLY_FOR_ARCHS= amd64 i386
LIB_DEPENDS= libcurl.so:ftp/curl
USES= cmake localbase:ldflags ssl
USES= cmake localbase:ldflags
USE_GITHUB= yes
GH_ACCOUNT= veg

6
biology/hyphy/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1622916930
SHA256 (veg-hyphy-2.5.31_GH0.tar.gz) = 2fa27ba3c4464ee2239570ebf6a038c6a3e216350ba8c3c22e43de0cb9c5dbd7
SIZE (veg-hyphy-2.5.31_GH0.tar.gz) = 5342292
TIMESTAMP = 1629465228
SHA256 (veg-hyphy-2.5.32_GH0.tar.gz) = e47be24b3de21a7a29eec6256cba7481ac8a98437d49eb682aefa5de2f4350ce
SIZE (veg-hyphy-2.5.32_GH0.tar.gz) = 5346015

27
biology/hyphy/files/patch-CMakeLists.txt
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@ -1,27 +0,0 @@
--- CMakeLists.txt.orig 2021-06-05 18:31:25 UTC
+++ CMakeLists.txt
@@ -307,21 +307,16 @@ endif(CMAKE_SYSTEM_NAME MATCHES "FreeBSD")
#-------------------------------------------------------------------------------
find_package(CURL)
if(${CURL_FOUND})
- #if(CMAKE_SYSTEM_NAME MATCHES "FreeBSD")
- # set(DEFAULT_LIBRARIES " crypto curl ssl")
- #else(CMAKE_SYSTEM_NAME MATCHES "FreeBSD")
- # set(DEFAULT_LIBRARIES "dl crypto curl ssl")
- #endif(CMAKE_SYSTEM_NAME MATCHES "FreeBSD")
message(${CURL_LIBRARIES})
- string(APPEND DEFAULT_LIBRARIES " " ${CURL_LIBRARIES})
+ list(APPEND DEFAULT_LIBRARIES ${CURL_LIBRARIES})
add_definitions (-D__HYPHYCURL__)
endif(${CURL_FOUND})
if(NOT NOZLIB)
find_package(ZLIB 1.2.9)
if(${ZLIB_FOUND})
- string(APPEND DEFAULT_LIBRARIES " " ${ZLIB_LIBRARIES})
- include_directories(${ZLIB_INCLUDE_DIRS})
+ list(APPEND DEFAULT_LIBRARIES ${ZLIB_LIBRARIES})
+ include_directories(${ZLIB_INCLUDE_DIRS})
add_definitions (-D__ZLIB__)
endif(${ZLIB_FOUND})
endif(NOT NOZLIB)

1
biology/hyphy/pkg-plist
View File

@ -91,6 +91,7 @@ bin/hyphy
%%DATADIR%%/TemplateBatchFiles/CodonModelCompare.bf
%%DATADIR%%/TemplateBatchFiles/CodonToProtein.bf
%%DATADIR%%/TemplateBatchFiles/ConvertDataFile.bf
%%DATADIR%%/TemplateBatchFiles/DirectionalREL.bf
%%DATADIR%%/TemplateBatchFiles/DistanceMatrix.bf
%%DATADIR%%/TemplateBatchFiles/Distances/CodonTools.def
%%DATADIR%%/TemplateBatchFiles/Distances/CodonTools2.def