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Code Issues Releases Activity

- Update to 1.5.0

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This commit is contained in:
Wen Heping 2010-11-10 08:52:26 +00:00
parent 55d546ae72
commit dbe1b3c46b
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=264349
3 changed files with 41 additions and 4 deletions
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3
biology/pycogent/Makefile
View File

@ -6,7 +6,7 @@
# #
PORTNAME= pycogent PORTNAME= pycogent
PORTVERSION= 1.4.1 PORTVERSION= 1.5
CATEGORIES= biology python CATEGORIES= biology python
MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION} MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION}
DISTNAME= PyCogent-${PORTVERSION} DISTNAME= PyCogent-${PORTVERSION}
@ -24,5 +24,6 @@ RUN_DEPENDS= ${BUILD_DEPENDS}
USE_PYTHON= yes USE_PYTHON= yes
USE_PYDISTUTILS= yes USE_PYDISTUTILS= yes
PYDISTUTILS_PKGNAME= cogent PYDISTUTILS_PKGNAME= cogent
PYDISTUTILS_PKGVERSION= 1.5.0
.include <bsd.port.mk> .include <bsd.port.mk>

5
biology/pycogent/distinfo
View File

@ -1,3 +1,2 @@
MD5 (PyCogent-1.4.1.tgz) = c5f50b108d87001d0840a7f721f78977 SHA256 (PyCogent-1.5.tgz) = b20276c6607ca2c53f26df8837e5d43c7e7af45bf0aa5592da4c73060891ab8d
SHA256 (PyCogent-1.4.1.tgz) = 4f0275c7b97e22b8a8286e8c5831599871f66bcf6bbb8f2dd70d3e300df3a217 SIZE (PyCogent-1.5.tgz) = 2992994
SIZE (PyCogent-1.4.1.tgz) = 2596901

37
biology/pycogent/pkg-plist
View File

@ -187,6 +187,9 @@
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.py %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyc %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyo %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.py %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyc %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyo %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyo
@ -477,6 +480,10 @@
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.py %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.py
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/_period.so
%%PYTHON_SITELIBDIR%%/cogent/maths/period.py
%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.py %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.py
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyo
@ -517,12 +524,18 @@
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyo
@ -565,6 +578,9 @@
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.py %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.py
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.py
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.py %%PYTHON_SITELIBDIR%%/cogent/parse/blast.py
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyo
@ -625,6 +641,9 @@
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.py %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.py
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.py
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.py %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.py
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyo
@ -652,12 +671,24 @@
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.py %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.py
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.py
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.py %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.py
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.py %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.py
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.py %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyo
@ -915,12 +946,18 @@
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.py %%PYTHON_SITELIBDIR%%/cogent/util/parallel.py
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyc %%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyo %%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.py
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.py %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.py
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyc %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyo %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/table.py %%PYTHON_SITELIBDIR%%/cogent/util/table.py
%%PYTHON_SITELIBDIR%%/cogent/util/table.pyc %%PYTHON_SITELIBDIR%%/cogent/util/table.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/table.pyo %%PYTHON_SITELIBDIR%%/cogent/util/table.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.py
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/transform.py %%PYTHON_SITELIBDIR%%/cogent/util/transform.py
%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyc %%PYTHON_SITELIBDIR%%/cogent/util/transform.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyo %%PYTHON_SITELIBDIR%%/cogent/util/transform.pyo