mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-29 05:38:00 +00:00
- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
- Fix spelling in pkg-descr PR: 212682 [1] Submitted by: Hannes Hauswedell (maintainer) [1]
This commit is contained in:
Pawel Pekala
parent
936f25cd31
commit
dc58fc197a
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=422156
@ -2,7 +2,7 @@
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# $FreeBSD$
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PORTNAME= seqan-apps
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PORTVERSION= 2.1.1
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PORTVERSION= 2.2.0
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DISTVERSIONPREFIX= seqan-v
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CATEGORIES= biology
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@ -1,2 +1,3 @@
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SHA256 (seqan-seqan-seqan-v2.1.1_GH0.tar.gz) = df083d5939d7e73fd00bbc6bb291ac7ea7b8d446cf89a9758fdffdc0eca9ec1c
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SIZE (seqan-seqan-seqan-v2.1.1_GH0.tar.gz) = 110874831
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TIMESTAMP = 1473848209
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SHA256 (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 6add074932c2723ef1fb658c88f906bdd6ced1fc34cb16a7410251ffc4cb8cc8
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SIZE (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 110936119
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@ -5,7 +5,7 @@ focus on biological data.
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This port contains applications built on SeqAn and developed
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within the SeqAn project. Among them are famous read mappers
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like RazerS and Yara, as well as many other tools. Some
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applications are packaged seperately and the library
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applications are packaged separately and the library
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can be found at biology/seqan.
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WWW: http://www.seqan.de/
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@ -2,8 +2,7 @@
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# $FreeBSD$
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PORTNAME= seqan
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PORTVERSION= 2.1.1
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PORTREVISION= 1
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PORTVERSION= 2.2.0
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CATEGORIES= biology
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MASTER_SITES= http://packages.seqan.de/seqan-library/
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DISTNAME= ${PORTNAME}-library-${PORTVERSION}
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@ -1,2 +1,3 @@
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SHA256 (seqan-library-2.1.1.tar.xz) = 8926f91fec5ce57e8efc70ac16cbf041bde0e0be463685b86e0d2e1e6a8169d7
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SIZE (seqan-library-2.1.1.tar.xz) = 5238884
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TIMESTAMP = 1473846790
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SHA256 (seqan-library-2.2.0.tar.xz) = b5c036a3d2fc2fe5f2d57dcd4d7c523a6df146ab7b44bc789f42004b058d72fd
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SIZE (seqan-library-2.2.0.tar.xz) = 5223004
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@ -2,12 +2,14 @@ include/seqan/align.h
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include/seqan/align/align_base.h
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include/seqan/align/align_cols.h
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include/seqan/align/align_config.h
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include/seqan/align/align_interface_wrapper.h
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include/seqan/align/align_iterator_base.h
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include/seqan/align/align_metafunctions.h
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include/seqan/align/align_traceback.h
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include/seqan/align/alignment_algorithm_tags.h
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include/seqan/align/alignment_operations.h
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include/seqan/align/dp_algorithm_impl.h
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include/seqan/align/dp_align_simd_helper.h
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include/seqan/align/dp_band.h
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include/seqan/align/dp_cell.h
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include/seqan/align/dp_cell_affine.h
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@ -27,6 +29,7 @@ include/seqan/align/dp_matrix_sparse.h
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include/seqan/align/dp_meta_info.h
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include/seqan/align/dp_profile.h
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include/seqan/align/dp_scout.h
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include/seqan/align/dp_scout_simd.h
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include/seqan/align/dp_setup.h
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include/seqan/align/dp_trace_segment.h
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include/seqan/align/dp_traceback_adaptor.h
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@ -336,6 +339,10 @@ include/seqan/index/find_pigeonhole.h
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include/seqan/index/find_quasar.h
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include/seqan/index/find_swift.h
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include/seqan/index/index_base.h
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include/seqan/index/index_bidirectional.h
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include/seqan/index/index_bidirectional_stree.h
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include/seqan/index/index_bifm.h
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include/seqan/index/index_bifm_stree.h
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include/seqan/index/index_bwt.h
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include/seqan/index/index_childtab.h
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include/seqan/index/index_device.h
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@ -348,7 +355,6 @@ include/seqan/index/index_esa_stree.h
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include/seqan/index/index_fm.h
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include/seqan/index/index_fm_compressed_sa.h
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include/seqan/index/index_fm_compressed_sa_iterator.h
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include/seqan/index/index_fm_device.h
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include/seqan/index/index_fm_dox.h
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include/seqan/index/index_fm_lf_table.h
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include/seqan/index/index_fm_rank_dictionary_base.h
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@ -444,7 +450,6 @@ include/seqan/misc/accumulators.h
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include/seqan/misc/base.h
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include/seqan/misc/bit_twiddling.h
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include/seqan/misc/bit_twiddling_functors.h
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include/seqan/misc/cuda.h
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include/seqan/misc/dequeue.h
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include/seqan/misc/edit_environment.h
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include/seqan/misc/interval_tree.h
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@ -464,6 +469,7 @@ include/seqan/modifier/modifier_alphabet_expansion.h
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include/seqan/modifier/modifier_cyclic_shape.h
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include/seqan/modifier/modifier_functors.h
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include/seqan/modifier/modifier_iterator.h
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include/seqan/modifier/modifier_padding.h
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include/seqan/modifier/modifier_position.h
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include/seqan/modifier/modifier_reverse.h
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include/seqan/modifier/modifier_shortcuts.h
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@ -505,10 +511,6 @@ include/seqan/pipe/pool_base.h
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include/seqan/pipe/pool_mapper.h
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include/seqan/pipe/pool_sorter.h
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include/seqan/platform.h
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include/seqan/platform/platform_gcc.h
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include/seqan/platform/platform_icc.h
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include/seqan/platform/platform_nvcc.h
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include/seqan/platform/platform_windows.h
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include/seqan/random.h
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include/seqan/random/random_base.h
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include/seqan/random/random_beta.h
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@ -536,7 +538,9 @@ include/seqan/score/score_base.h
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include/seqan/score/score_edit.h
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include/seqan/score/score_matrix.h
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include/seqan/score/score_matrix_data.h
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include/seqan/score/score_matrix_dyn.h
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include/seqan/score/score_matrix_io.h
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include/seqan/score/score_simd_wrapper.h
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include/seqan/score/score_simple.h
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include/seqan/seeds.h
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include/seqan/seeds/banded_chain_alignment.h
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@ -569,7 +573,6 @@ include/seqan/seq_io/sequence_file.h
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include/seqan/sequence.h
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include/seqan/sequence/adapt_array_pointer.h
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include/seqan/sequence/adapt_stl_container.h
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include/seqan/sequence/adapt_thrust_vector.h
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include/seqan/sequence/container_view.h
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include/seqan/sequence/container_view_zip.h
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include/seqan/sequence/iter_concat_virtual.h
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@ -594,7 +597,6 @@ include/seqan/sequence/string_set_base.h
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include/seqan/sequence/string_set_concat_direct.h
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include/seqan/sequence/string_set_dependent_generous.h
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include/seqan/sequence/string_set_dependent_tight.h
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include/seqan/sequence/string_set_device.h
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include/seqan/sequence/string_set_owner.h
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include/seqan/sequence/string_set_segment.h
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include/seqan/sequence/string_set_view.h
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@ -649,12 +651,8 @@ include/seqan/system/file_directory.h
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include/seqan/system/file_forwards.h
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include/seqan/system/file_sync.h
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include/seqan/system/system_base.h
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include/seqan/system/system_condition.h
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include/seqan/system/system_critical_section.h
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include/seqan/system/system_event.h
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include/seqan/system/system_event_win.h
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include/seqan/system/system_forwards.h
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include/seqan/system/system_mutex.h
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include/seqan/system/system_thread.h
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include/seqan/tabix_io.h
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include/seqan/tabix_io/tabix_index_tbi.h
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include/seqan/translation.h
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@ -705,6 +703,7 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BedRecord.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BedRgb.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BetaDistribution.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BidirectionalIndex.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastIOContext.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastMatch.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastMatchField.html
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@ -805,6 +804,7 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/class_RankSupportBitString.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_ReadStoreElement.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_Repeat.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_RevTextFibre.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_RightArrayBinaryTree.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_RuntimeError.html
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%%PORTDOCS%%%%DOCSDIR%%/html/class_Score.html
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@ -1042,6 +1042,7 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/stream/lexical_cast.cpp.stdout
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%%PORTDOCS%%%%DOCSDIR%%/html/demos/tutorial/sam_and_bam_io/example.sam
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%%PORTDOCS%%%%DOCSDIR%%/html/demos/tutorial/sam_and_bam_io/solution1.cpp
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%%PORTDOCS%%%%DOCSDIR%%/html/enum_AminoAcidScoreMatrixID.html
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%%PORTDOCS%%%%DOCSDIR%%/html/enum_ArgParseArgument_58_58ArgumentType.html
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%%PORTDOCS%%%%DOCSDIR%%/html/enum_ArgumentParser_58_58ParseResult.html
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%%PORTDOCS%%%%DOCSDIR%%/html/enum_BamFlags.html
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@ -1291,6 +1292,7 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringComplement.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverse.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverseComplement.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SelectableAminoAcidMatrix.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SimpleScoreTypedef.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_TraceBack.html
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%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_UnicodeString.html
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@ -1390,8 +1392,10 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/js/lang_entities.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/less.min.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/link.data.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/module_tree.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/rubydoc_custom.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/search.data.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/search.data.module.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/search.engine.js
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%%PORTDOCS%%%%DOCSDIR%%/html/js/version.js
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/3L.less
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@ -1424,6 +1428,8 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/knockout-examples.html
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/less/bootstrap-multiselect.less
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/tests.html
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/css/bootstrap-treeview.css
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/js/bootstrap-treeview.js
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.css
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.min.css
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.eot
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@ -1652,20 +1658,23 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/unit.js
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%%PORTDOCS%%%%DOCSDIR%%/html/lib/styles.less
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%%PORTDOCS%%%%DOCSDIR%%/html/list.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_PLATFORM_95CUDA.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95CLANG.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95GCC.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95LINTEL.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95MSVC.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95WINTEL.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_PLATFORM_95GCC.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95DEVICE.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95ENABLE_95PARALLELISM.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95GLOBAL.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HAS_95BZIP2.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HAS_95ZLIB.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HOST.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HOST_95DEVICE.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95IS_9532_95BIT.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95IS_9564_95BIT.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95OMP_95PRAGMA.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95PATH_95TO_95ROOT.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95TEMP_95FILENAME.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95GNU.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95LLVM.html
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%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95VS.html
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%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoConstraintIterator.html
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%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoIndexCountChildren.html
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%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoMaximalRepeats.html
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@ -1784,6 +1793,8 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MaxRepeatsIterator.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModCyclicShapeModifiedIterator.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModCyclicShapeModifiedString.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModPaddingIterator.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModPaddingString.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModReverseIterator.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModReverseString.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModViewModifiedIterator.html
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@ -1829,6 +1840,7 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileIn.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileOut.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Sampler.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ScoreSimdWrapper.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SeqFileIn.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SeqFileOut.html
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%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SetHorspoolPattern.html
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@ -1899,5 +1911,3 @@ share/cmake/Modules/FindSeqAn.cmake
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%%PORTDOCS%%%%DOCSDIR%%/html/tag_Nothing.html
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%%PORTDOCS%%%%DOCSDIR%%/html/variable_BAM_95FLAG_95SUPPLEMENTARY_32_61_320x0800.html
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%%PORTDOCS%%%%DOCSDIR%%/html/variable_LibraryStoreElementstd.html
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%%PORTDOCS%%@dir %%DOCSDIR%%/html/docs/seqan
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%%PORTDOCS%%@dir %%DOCSDIR%%/html/lists
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Block a user