mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-20 00:21:35 +00:00
biology/libsedml: New port: C++ SED-ML library
This commit is contained in:
Yuri Victorovich
parent
b20ce0d061
commit
dd804e9871
@ -78,6 +78,7 @@
|
||||
SUBDIR += libgtextutils
|
||||
SUBDIR += libnuml
|
||||
SUBDIR += libsbml
|
||||
SUBDIR += libsedml
|
||||
SUBDIR += linux-foldingathome
|
||||
SUBDIR += mafft
|
||||
SUBDIR += mapm3
|
||||
|
||||
30
biology/libsedml/Makefile
Normal file
30
biology/libsedml/Makefile
Normal file
@ -0,0 +1,30 @@
|
||||
PORTNAME= libsedml
|
||||
DISTVERSIONPREFIX= v
|
||||
DISTVERSION= 2.0.26
|
||||
CATEGORIES= biology devel
|
||||
|
||||
MAINTAINER= yuri@FreeBSD.org
|
||||
COMMENT= C++ SED-ML library
|
||||
|
||||
LICENSE= BSD2CLAUSE
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
|
||||
|
||||
BUILD_DEPENDS= libsbml>0:biology/libsbml \
|
||||
libnuml>0:biology/libnuml # statically linked, even into a shared library, see https://github.com/fbergmann/libSEDML/issues/155
|
||||
RUN_DEPENDS= libsbml>0:biology/libsbml \
|
||||
libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency
|
||||
|
||||
USES= cmake gnome
|
||||
USE_GNOME= libxml2
|
||||
USE_LDCONFIG= yes
|
||||
|
||||
USE_GITHUB= yes
|
||||
GH_ACCOUNT= fbergmann
|
||||
GH_PROJECT= libSEDML
|
||||
|
||||
post-install:
|
||||
@${RM} -r ${STAGEDIR}${DATADIR}
|
||||
|
||||
# the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155
|
||||
|
||||
.include <bsd.port.mk>
|
||||
3
biology/libsedml/distinfo
Normal file
3
biology/libsedml/distinfo
Normal file
@ -0,0 +1,3 @@
|
||||
TIMESTAMP = 1632069547
|
||||
SHA256 (fbergmann-libSEDML-v2.0.26_GH0.tar.gz) = 74334f2d2e0f4aae2f58f4013c432220ba12a6a6be4cf9478adbbefab7441b41
|
||||
SIZE (fbergmann-libSEDML-v2.0.26_GH0.tar.gz) = 956845
|
||||
4
biology/libsedml/pkg-descr
Normal file
4
biology/libsedml/pkg-descr
Normal file
@ -0,0 +1,4 @@
|
||||
The libSEDML project makes use of libSBML XML layer as well as code generation
|
||||
as starting point to produce a library for reading and writing of SED-ML models.
|
||||
|
||||
WWW: https://github.com/fbergmann/libSEDML
|
||||
111
biology/libsedml/pkg-plist
Normal file
111
biology/libsedml/pkg-plist
Normal file
@ -0,0 +1,111 @@
|
||||
include/sedml/SedAbstractCurve.h
|
||||
include/sedml/SedAbstractTask.h
|
||||
include/sedml/SedAddXML.h
|
||||
include/sedml/SedAdjustableParameter.h
|
||||
include/sedml/SedAlgorithm.h
|
||||
include/sedml/SedAlgorithmParameter.h
|
||||
include/sedml/SedAnalysis.h
|
||||
include/sedml/SedAppliedDimension.h
|
||||
include/sedml/SedAxis.h
|
||||
include/sedml/SedBase.h
|
||||
include/sedml/SedBounds.h
|
||||
include/sedml/SedChange.h
|
||||
include/sedml/SedChangeAttribute.h
|
||||
include/sedml/SedChangeXML.h
|
||||
include/sedml/SedComputeChange.h
|
||||
include/sedml/SedConstructorException.h
|
||||
include/sedml/SedCurve.h
|
||||
include/sedml/SedDataDescription.h
|
||||
include/sedml/SedDataGenerator.h
|
||||
include/sedml/SedDataRange.h
|
||||
include/sedml/SedDataSet.h
|
||||
include/sedml/SedDataSource.h
|
||||
include/sedml/SedDocument.h
|
||||
include/sedml/SedElementFilter.h
|
||||
include/sedml/SedError.h
|
||||
include/sedml/SedErrorLog.h
|
||||
include/sedml/SedErrorTable.h
|
||||
include/sedml/SedExperimentReference.h
|
||||
include/sedml/SedFigure.h
|
||||
include/sedml/SedFill.h
|
||||
include/sedml/SedFitExperiment.h
|
||||
include/sedml/SedFitMapping.h
|
||||
include/sedml/SedFunctionalRange.h
|
||||
include/sedml/SedLeastSquareObjectiveFunction.h
|
||||
include/sedml/SedLine.h
|
||||
include/sedml/SedListOf.h
|
||||
include/sedml/SedListOfAdjustableParameters.h
|
||||
include/sedml/SedListOfAlgorithmParameters.h
|
||||
include/sedml/SedListOfAppliedDimensions.h
|
||||
include/sedml/SedListOfChanges.h
|
||||
include/sedml/SedListOfCurves.h
|
||||
include/sedml/SedListOfDataDescriptions.h
|
||||
include/sedml/SedListOfDataGenerators.h
|
||||
include/sedml/SedListOfDataSets.h
|
||||
include/sedml/SedListOfDataSources.h
|
||||
include/sedml/SedListOfExperimentReferences.h
|
||||
include/sedml/SedListOfFitExperiments.h
|
||||
include/sedml/SedListOfFitMappings.h
|
||||
include/sedml/SedListOfModels.h
|
||||
include/sedml/SedListOfOutputs.h
|
||||
include/sedml/SedListOfParameters.h
|
||||
include/sedml/SedListOfRanges.h
|
||||
include/sedml/SedListOfSetValues.h
|
||||
include/sedml/SedListOfSimulations.h
|
||||
include/sedml/SedListOfSlices.h
|
||||
include/sedml/SedListOfStyles.h
|
||||
include/sedml/SedListOfSubPlots.h
|
||||
include/sedml/SedListOfSubTasks.h
|
||||
include/sedml/SedListOfSurfaces.h
|
||||
include/sedml/SedListOfTasks.h
|
||||
include/sedml/SedListOfVariables.h
|
||||
include/sedml/SedMarker.h
|
||||
include/sedml/SedModel.h
|
||||
include/sedml/SedNamespaces.h
|
||||
include/sedml/SedObjective.h
|
||||
include/sedml/SedOneStep.h
|
||||
include/sedml/SedOutput.h
|
||||
include/sedml/SedParameter.h
|
||||
include/sedml/SedParameterEstimationReport.h
|
||||
include/sedml/SedParameterEstimationResultPlot.h
|
||||
include/sedml/SedParameterEstimationTask.h
|
||||
include/sedml/SedPlot.h
|
||||
include/sedml/SedPlot2D.h
|
||||
include/sedml/SedPlot3D.h
|
||||
include/sedml/SedRange.h
|
||||
include/sedml/SedReader.h
|
||||
include/sedml/SedRemoveXML.h
|
||||
include/sedml/SedRepeatedTask.h
|
||||
include/sedml/SedReport.h
|
||||
include/sedml/SedSetValue.h
|
||||
include/sedml/SedShadedArea.h
|
||||
include/sedml/SedSimulation.h
|
||||
include/sedml/SedSlice.h
|
||||
include/sedml/SedSteadyState.h
|
||||
include/sedml/SedStyle.h
|
||||
include/sedml/SedSubPlot.h
|
||||
include/sedml/SedSubTask.h
|
||||
include/sedml/SedSurface.h
|
||||
include/sedml/SedTask.h
|
||||
include/sedml/SedTypeCodes.h
|
||||
include/sedml/SedTypes.h
|
||||
include/sedml/SedUniformRange.h
|
||||
include/sedml/SedUniformTimeCourse.h
|
||||
include/sedml/SedVariable.h
|
||||
include/sedml/SedVectorRange.h
|
||||
include/sedml/SedVisitor.h
|
||||
include/sedml/SedWaterfallPlot.h
|
||||
include/sedml/SedWriter.h
|
||||
include/sedml/common/SedOperationReturnValues.h
|
||||
include/sedml/common/SedmlEnumerations.h
|
||||
include/sedml/common/common.h
|
||||
include/sedml/common/extern.h
|
||||
include/sedml/common/libsedml-config-common.h
|
||||
include/sedml/common/libsedml-config.h
|
||||
include/sedml/common/libsedml-namespace.h
|
||||
include/sedml/common/libsedml-version.h
|
||||
include/sedml/common/sedmlfwd.h
|
||||
lib/libsedml-static.a
|
||||
lib/libsedml.so
|
||||
lib/libsedml.so.2
|
||||
lib/libsedml.so.2.0.26
|
||||
Loading…
Reference in New Issue
Block a user