New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions

svn path=/head/; revision=503774

science/Makefile

@@ -308,6 +308,7 @@
     SUBDIR += simint
     SUBDIR += simlib
     SUBDIR += simsmith
+    SUBDIR += smoldyn
     SUBDIR += sparta
     SUBDIR += spglib
     SUBDIR += step

science/smoldyn/Makefile

@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PORTNAME=	smoldyn
+DISTVERSION=	2.60
+CATEGORIES=	science
+MASTER_SITES=	http://www.smoldyn.org/
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Biochemical simulator for molecular diffusion, surface interactions
+
+LICENSE=	LGPL3
+LICENSE_FILE=	${WRKSRC}/License.txt
+
+LIB_DEPENDS=	libtiff.so:graphics/tiff
+
+USES=		cmake gl tar:tgz
+USE_GL=		gl glu glut
+USE_XORG=	xi xmu
+
+PLIST_FILES=	bin/${PORTNAME}
+
+.include <bsd.port.mk>

science/smoldyn/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1560034820
+SHA256 (smoldyn-2.60.tgz) = 912cfbd2d165070fe7c36542b1c312a8dec100d4979223e63feafc6a201833af
+SIZE (smoldyn-2.60.tgz) = 44801998

science/smoldyn/pkg-descr

@@ -0,0 +1,15 @@
+Smoldyn is a computer program for cell-scale biochemical simulations. It
+simulates each molecule of interest individually to capture natural
+stochasticity and to yield nanometer-scale spatial resolution. It treats other
+molecules implicitly, enabling it to simulate hundreds of thousands of molecules
+over several minutes of real time. Simulated molecules diffuse, react, are
+confined by surfaces, and bind to membranes much as they would in a real
+biological system.
+
+Smoldyn is easy to use and easy to install. It is more accurate and faster than
+other particle-based simulators. Smoldyn's unique features include:
+a "virtual experimenter" who can manipulate or measure the simulated system,
+support for spatial compartments, molecules with excluded volume, and
+simulations in 1, 2, or 3 dimensions.
+
+WWW: http://www.smoldyn.org/