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Code Issues Releases Activity

- Update to 35.4.7 [1]

Browse Source 
- Obey PREFIX [2]

Submitted by:	maintainer [1] [2]
Reported by:	QATty [2]
This commit is contained in:
Ion-Mihai Tetcu 2009-06-09 07:53:37 +00:00
parent 22eb6cd744
commit e110a3719d
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=235478
4 changed files with 27 additions and 8 deletions
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9
biology/fasta3/Makefile
View File

@ -7,7 +7,7 @@
#
PORTNAME= fasta3
PORTVERSION= 35.4.4
PORTVERSION= 35.4.7
CATEGORIES= biology
MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta3/
DISTNAME= fasta-${PORTVERSION}
@ -34,12 +34,11 @@ FASTA3_DOCS= README.versions fasta3x.me fasta3x.doc \
DATA= data/*.mat
EXAMPLES= seq/*.aa seq/*.lc seq/*.seq seq/*.lib
MAN1= fasta35.1 fastf3.1 fasts3.1 map_db.1 prss3.1 ps_lav.1 \
pvcomp.1
MAN1= fasta35.1 map_db.1 ps_lav.1 pvcomp.1
MLINKS= fasta35.1 tfasta35.1 fasta35.1 fastx35.1 fasta35.1 tfastx35.1 \
fasta35.1 fasty35.1 fasta35.1 tfasty35.1 fasta35.1 ssearch35.1 \
fasta35.1 fastf35.1 fasta35.1 fasts35.1 fasta35.1 tfasts35.1 \
fasta35.1 fastm35.1 fasta35.1 fastf35.1 fasta35.1 ggsearch35.1 \
fasta35.1 fastm35.1 fasta35.1 tfastf35.1 fasta35.1 ggsearch35.1 \
fasta35.1 lalign35.1 fasta35.1 prss35.1 fasta35.1 prfx35.1
PLIST_SUB= VER=${PORTVERSION:R:R}
@ -57,7 +56,7 @@ post-install:
${INSTALL_DATA} ${WRKSRC}/${ex} ${EXAMPLESDIR}
.endfor
.for manpage in ${MAN1}
@ ${INSTALL_MAN} ${WRKSRC}/doc/${manpage} ${MAN1PREFIX}/man/man1/
${INSTALL_MAN} ${WRKSRC}/doc/${manpage} ${MAN1PREFIX}/man/man1/
.endfor
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCSDIR}

6
biology/fasta3/distinfo
View File

@ -1,3 +1,3 @@
MD5 (fasta-35.4.4.tar.gz) = a96d498fc548c8b65b07f13b9548a36d
SHA256 (fasta-35.4.4.tar.gz) = 744911dd6524e57f63c32d76016bd071e16b7c39c34277b2a4d79a601e74d258
SIZE (fasta-35.4.4.tar.gz) = 612851
MD5 (fasta-35.4.7.tar.gz) = b5264743c0cbdf7f4d29de82b725f277
SHA256 (fasta-35.4.7.tar.gz) = 02b34aee73b610c37c8cc7fc5cc06c045402d424df5ffa6309afb147bd4e6120
SIZE (fasta-35.4.7.tar.gz) = 630897

19
biology/fasta3/files/patch-Makefile.freebsd Normal file
View File

@ -0,0 +1,19 @@
--- make/Makefile.freebsd.orig 2009-06-08 21:07:00.000000000 -0300
+++ make/Makefile.freebsd 2009-06-08 21:08:01.000000000 -0300
@@ -8,6 +8,7 @@
# defined. In FreeBSD this happens when fasta3 is build from the port or
# when the user has set these variables -- most notably CC and/or CFLAGS
# -- in /etc/make.conf
+LOCALBASE?= /usr/local
# Compiler executable, and optional flags
CC?= gcc
@@ -38,7 +39,7 @@
CFLAGS+= ${COMMON_CFLAGS} ${STANDARD_CFLAGS}
BIN = ../bin
-XDIR = /usr/local/bin
+XDIR = ${LOCALBASE}/bin
LIB_M+= -lm

1
biology/fasta3/pkg-plist
View File

@ -17,6 +17,7 @@ bin/glsearch%%VER%%_t
bin/lalign%%VER%%
bin/lav2ps
bin/lav2svg
bin/list_db
bin/map_db
bin/ssearch%%VER%%
bin/ssearch%%VER%%_t