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Stage science/vmd
I clobbered the Makefile diff (sorry danfe@). The entire makefile was tabbed over 3 times. There was also no respect for 80 columns so a good part of the clobber came from line wrapping. I also made $TAR use real switches (e.g. -xzf) rather than undocumented by supported (zxf) This is another manual package / obtain restricted data files/ only port so I can't test much of it. PR: 193090 Submitted by: turutani (Kyoto)
This commit is contained in:
John Marino
parent
35da37bce6
commit
e49ea6bbb6
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=366620
@ -1,46 +1,40 @@
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# Created by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
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# $FreeBSD$
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PORTNAME= vmd
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DISTVERSION= 1.9.1
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PORTREVISION= 1
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CATEGORIES= science graphics python tcl tk
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MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \
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http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \
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http://www.ks.uiuc.edu/Research/vmd/extsrcs/:stride
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DISTFILES= ${VMD_DIST} \
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${TACHYON_DIST}:tachyon \
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${STRIDE_DIST}:stride
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PORTNAME= vmd
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DISTVERSION= 1.9.1
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PORTREVISION= 2
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CATEGORIES= science graphics python tcl tk
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MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \
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http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \
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http://www.ks.uiuc.edu/Research/vmd/extsrcs/:stride
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DISTFILES= ${VMD_DIST} \
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${TACHYON_DIST}:tachyon \
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${STRIDE_DIST}:stride
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Molecular visualization program
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BUILD_DEPENDS= makedepend:${PORTSDIR}/devel/makedepend \
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${PYNUMERIC}
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LIB_DEPENDS= libtcl85.so:${PORTSDIR}/lang/tcl85 \
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libtk85.so:${PORTSDIR}/x11-toolkits/tk85 \
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libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
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libnetcdf.so:${PORTSDIR}/science/netcdf
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RUN_DEPENDS= ${PYNUMERIC}
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BUILD_DEPENDS= makedepend:${PORTSDIR}/devel/makedepend \
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${PYNUMERIC}
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LIB_DEPENDS= libtcl85.so:${PORTSDIR}/lang/tcl85 \
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libtk85.so:${PORTSDIR}/x11-toolkits/tk85 \
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libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
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libnetcdf.so:${PORTSDIR}/science/netcdf
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RUN_DEPENDS= ${PYNUMERIC}
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USES= gmake perl5
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USE_PERL5= build
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USE_GL= glu
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USE_PYTHON= yes
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USES= gmake perl5 python
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USE_PERL5= build
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USE_GL= glu
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ONLY_FOR_ARCHS= i386 amd64
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ONLY_FOR_ARCHS= i386 amd64
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RESTRICTED= License has restrictions
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RESTRICTED= License has restrictions
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VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz
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TACHYON_DIST= tachyon-0.99b2.tar.gz
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# I get stride.tar.gz from ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/
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# but the www.ks.uiuc.edu site (that gives Stride_src.tar.Z) is closer
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# to vmd upstream (and google actually knows about it).
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#STRIDE_DIST= stride.tar.gz
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STRIDE_DIST= Stride_src.tar.Z
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VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz
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TACHYON_DIST= tachyon-0.99b2.tar.gz
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STRIDE_DIST= Stride_src.tar.Z
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NO_STAGE= yes
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.include <bsd.port.pre.mk>
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.if ${ARCH} == "amd64"
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@ -55,15 +49,19 @@ PLIST_SUB+= VMD_ARCH=${VMD_ARCH}
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# Check for VMD sources
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.if !exists(${DISTDIR}/${VMD_DIST})
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IGNORE= Because of licensing restrictions, you must fetch the source distribution manually. Please access http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD with a web browser. You will be required to log in and register, but you can create an account on this page. After registration and accepting the University of Illinois agreement, download the source file, ${VMD_DIST}. Please place this file in ${DISTDIR}, and re-run make
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IGNORE= license restrictions require manual fetching of the distribution\
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source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\
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with a browser. You will be required to register, log in, and accept\
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the University of Illinois agreement before you can download the\
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${VMD_DIST} source file. Place this file in ${DISTDIR} and try again.
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.endif
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do-extract:
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${MKDIR} ${WRKDIR}
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${TAR} xfz ${DISTDIR}/${VMD_DIST} -C ${WRKDIR}
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${TAR} xfz ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf
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${TAR} xfz ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib
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${TAR} xfz ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride
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${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR}
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${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf
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${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib
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${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride
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post-patch:
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${REINPLACE_CMD} "s/-lpthread/${PTHREAD_LIBS}/" ${WRKSRC}/configure
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@ -78,15 +76,42 @@ post-patch:
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-e "s|/usr/local|${LOCALBASE}|g" ${WRKSRC}/configure
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do-build:
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} bsd -C ${WRKSRC}/lib/tachyon/unix && ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH}
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${SETENV} ${MAKE_ENV} TCLLIB=-L${PREFIX}/lib/tcl8.5 TCLINC=-I${PREFIX}/include/tcl8.5 PLUGINDIR=${WRKSRC}/plugins ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins
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${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.5 TK_INCLUDE_DIR=${PREFIX}/include/tk8.5 ${MAKE_CMD} ${VMD_TARGET} -C ${WRKSRC}
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} bsd -C ${WRKSRC}/lib/tachyon/unix \
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&& ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon \
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${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH}
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${SETENV} ${MAKE_ENV} TCLLIB=-L${PREFIX}/lib/tcl8.5 \
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TCLINC=-I${PREFIX}/include/tcl8.5 PLUGINDIR=${WRKSRC}/plugins \
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${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins
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${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.5 \
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TK_INCLUDE_DIR=${PREFIX}/include/tk8.5 ${MAKE_CMD} \
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${VMD_TARGET} -C ${WRKSRC}
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} all -C ${WRKSRC}/src
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} depend -C ${WRKSRC}/lib/surf && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} surf -C ${WRKSRC}/lib/surf && ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH}
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} -C ${WRKSRC}/lib/stride && ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH}
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} depend -C ${WRKSRC}/lib/surf \
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&& ${SETENV} ${MAKE_ENV} ${MAKE_CMD} surf -C \
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${WRKSRC}/lib/surf \
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&& ${MV} ${WRKSRC}/lib/surf/surf \
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${WRKSRC}/lib/surf/surf_${VMD_ARCH}
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} -C ${WRKSRC}/lib/stride \
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&& ${MV} ${WRKSRC}/lib/stride/stride \
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${WRKSRC}/lib/stride/stride_${VMD_ARCH}
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do-install:
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} -C ${WRKSRC}/src install
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@${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/lib/vmd
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${SETENV} ${MAKE_ENV} DESTDIR=${STAGEDIR} \
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${MAKE_CMD} -C ${WRKSRC}/src install
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${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \
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${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so
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.for f in tcl/autopsf1.3/psfcheck.so tcl/hesstrans1.0/hesstrans.so \
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tcl/mutator1.4/libalchemify.so tcl/pmepot1.0/libpmepot.so \
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tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \
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tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \
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tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \
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tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \
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tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \
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tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \
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tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \
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tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \
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bin/catdcd4.0/catdcd bin/cionize1.0/cionize
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${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f}
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.endfor
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.include <bsd.port.post.mk>
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@ -1,5 +1,5 @@
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--- configure.orig 2009-08-01 03:19:34.000000000 -0400
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+++ configure 2010-01-08 22:01:38.000000000 -0500
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--- configure.orig 2012-02-02 16:53:54.000000000 +0900
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+++ configure 2014-08-28 16:42:38.000000000 +0900
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@@ -13,10 +13,10 @@
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$install_name = "vmd";
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@ -37,3 +37,72 @@
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NVCC = $arch_nvcc
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NVCCFLAGS = $arch_nvccflags -DARCH_$config_arch \$(DEFINES) \$(INCDIRS)
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@@ -2997,38 +2997,38 @@
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\$(COMPILERC) \$(RCFLAGS)
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install:
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- if [ ! -d "$install_library_dir" ]; then \\
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- \$(MAKEDIR) "$install_library_dir" ; \\
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+ if [ ! -d "\${DESTDIR}$install_library_dir" ]; then \\
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+ \$(MAKEDIR) "\${DESTDIR}$install_library_dir" ; \\
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fi ; \\
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- if [ ! -d "$install_bin_dir" ]; then \\
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- \$(MAKEDIR) "$install_bin_dir" ; \\
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+ if [ ! -d "\${DESTDIR}$install_bin_dir" ]; then \\
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+ \$(MAKEDIR) "\${DESTDIR}$install_bin_dir" ; \\
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fi ; \\
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- if [ ! -d "$install_library_dir"/doc ]; then \\
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- \$(MAKEDIR) "$install_library_dir"/doc; \\
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+ if [ ! -d "\${DESTDIR}$install_library_dir"/doc ]; then \\
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+ \$(MAKEDIR) "\${DESTDIR}$install_library_dir"/doc; \\
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fi
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- -\$(COPY) ../Announcement "$install_library_dir"
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- -\$(COPY) ../README "$install_library_dir"
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- -\$(COPY) ../LICENSE "$install_library_dir"
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- -\$(COPY) $vmd_doc_dir/ug.pdf "$install_library_dir"/doc
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- if [ -f $install_library_dir/$config_progname ]; then \\
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- \$(MOVE) "$install_library_dir/$config_progname" "$install_library_dir/OLD_$config_progname" ; \$(DELETE) "$install_library_dir/OLD_$config_progname" ; fi
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- -\$(COPY) ../$config_arch/$config_progname "$install_library_dir"
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+ -\$(COPY) ../Announcement "\${DESTDIR}$install_library_dir"
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+ -\$(COPY) ../README "\${DESTDIR}$install_library_dir"
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+ -\$(COPY) ../LICENSE "\${DESTDIR}$install_library_dir"
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+ -\$(COPY) $vmd_doc_dir/ug.pdf "\${DESTDIR}$install_library_dir"/doc
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+ if [ -f \${DESTDIR}$install_library_dir/$config_progname ]; then \\
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+ \$(MOVE) "\${DESTDIR}$install_library_dir/$config_progname" "\${DESTDIR}$install_library_dir/OLD_$config_progname" ; \$(DELETE) "\${DESTDIR}$install_library_dir/OLD_$config_progname" ; fi
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+ -\$(COPY) ../$config_arch/$config_progname "\${DESTDIR}$install_library_dir"
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if [ -d "../lib/redistrib/lib_$config_arch" ]; then \\
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\$(CD) ../lib/redistrib/lib_$config_arch; \$(TAR) -cf - ./* | \\
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- (cd "$install_library_dir" ; \$(TAR) -xf -) \\
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+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -) \\
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fi ;
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- -\$(COPY) @vmd_other_exe "$install_library_dir"
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+ -\$(COPY) @vmd_other_exe "\${DESTDIR}$install_library_dir"
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-\$(CD) ..; \$(TAR) -cf - scripts | \\
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- (cd "$install_library_dir" ; \$(TAR) -xf -)
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+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
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-\$(CD) $vmd_library_dir; \$(TAR) -cf - scripts | \\
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- (cd "$install_library_dir" ; \$(TAR) -xf -)
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+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
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-\$(CD) ..; \$(TAR) -cf - python | \\
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- (cd "$install_library_dir"/scripts ; \$(TAR) -xf -)
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+ (cd "\${DESTDIR}$install_library_dir"/scripts ; \$(TAR) -xf -)
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-\$(CD) ..; \$(TAR) -cf - plugins | \\
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- (cd "$install_library_dir" ; \$(TAR) -xf -)
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+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
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-\$(CD) ..; \$(TAR) -cf - shaders | \\
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- (cd "$install_library_dir" ; \$(TAR) -xf -)
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- -\$(COPY) ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat "$install_library_dir"
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+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
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+ -\$(COPY) ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat "\${DESTDIR}$install_library_dir"
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\$(CD) $vmd_bin_dir ; \\
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if [ -f run_vmd_tmp ]; then \$(DELETE) run_vmd_tmp; fi ; \\
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if [ ! -x "/bin/csh" ]; then \\
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@@ -3044,7 +3044,7 @@
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cat $vmd_bin_csh >> run_vmd_tmp ; \\
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fi ; \\
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chmod +x run_vmd_tmp ; \\
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- \$(COPY) run_vmd_tmp "$install_bin_dir"/$install_name ; \\
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+ \$(COPY) run_vmd_tmp "\${DESTDIR}$install_bin_dir"/$install_name ; \\
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\$(DELETE) run_vmd_tmp
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\$(ECHO) Make sure "$install_bin_dir"/$install_name is in your path.
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\$(ECHO) "VMD installation complete. Enjoy!"
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