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Update to 20090112 R1 version.

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This commit is contained in:
Maho Nakata 2009-05-08 06:08:44 +00:00
parent 597a186afe
commit efd040cee7
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=233409
8 changed files with 85 additions and 79 deletions
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32
science/gamess/Makefile
View File

@ -7,7 +7,6 @@
PORTNAME= gamess
PORTVERSION= ${SNAPDATE}
PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= #http://www.msg.ameslab.gov/GAMESS/License_Agreement.html
DISTNAME= gamess-current
@ -18,7 +17,7 @@ COMMENT= A freely obtainable ab-initio molecular orbital calculation program
USE_GMAKE= yes
WRKSRC= ${WRKDIR}/gamess
SNAPDATE= 20070524.3
SNAPDATE= 20090112.1
USE_FORTRAN= yes
@ -33,17 +32,32 @@ MANUAL_PACKAGE_BUILD=You must manually get the source distribution from master s
.include <bsd.port.pre.mk>
.if exists(${LOCALBASE}/lib/libatlas_r.so) && !defined(WITH_BLAS)
WITH_ATLAS= yes
USE_BLAS?= reference
.if exists(${LOCALBASE}/lib/libgoto.so)
USE_BLAS= gotoblas
.elif exists(${LOCALBASE}/lib/libatlas_r.so)
USE_BLAS= atlas
.endif
.if defined(WITH_ATLAS)
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
BLAS= -lf77blas -latlas
.else
. if ${USE_BLAS} == reference
LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack
BLAS= -lblas
LAPACK= -llapack
.elif ${USE_BLAS} == gotoblas
LIB_DEPENDS+= goto:${PORTSDIR}/math/gotoblas
LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack
BLAS= -lgotop
LAPACK= -lgotop -llapack
.elif ${USE_BLAS} == atlas
LIB_DEPENDS+= atlas:${PORTSDIR}/math/atlas
BLAS= -lptf77blas -lptcblas -latlas_r
LAPACK= -lalapack_r
.endif
MAKE_ENV+= LANG="C"
.if defined(WITH_OPTIMIZED_FLAGS)
.if ${ARCH} == "amd64"
CFLAGS+= -pipe -O3 -ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops -funit-at-a-time
@ -62,7 +76,7 @@ CC= ${LOCALBASE}/intel_cc_80/bin/icc
FFLAGS= -axP -xW -ipo -O3 -Vaxlib
CFLAGS= -axP -xW -ipo -O3 -Vaxlib
LIBSVM= -lsvml
LIBG2C= -lg2c
LIBG2C= -lg2c
.else
LIBG2C=
LIBSVM=

6
science/gamess/distinfo
View File

@ -1,3 +1,3 @@
MD5 (gamess/20070524.3/gamess-current.tar.gz) = 566fbdb5890abe2c04d1b5458400405b
SHA256 (gamess/20070524.3/gamess-current.tar.gz) = c9650cca2c2f7b5973636d4d49f907fc5f975f430b0f78dd7d2ee2d83109900d
SIZE (gamess/20070524.3/gamess-current.tar.gz) = 8219816
MD5 (gamess/20090112.1/gamess-current.tar.gz) = a4141c0a3eac0d729192a3e0821ea6a3
SHA256 (gamess/20090112.1/gamess-current.tar.gz) = 9f7763933479ba8aa730c392af25b8a271152115a0392707786b45871b52f6e0
SIZE (gamess/20090112.1/gamess-current.tar.gz) = 10823509

16
science/gamess/files/patch-comp
View File

@ -1,9 +1,9 @@
--- comp.orig Wed Jul 11 05:00:07 2007
+++ comp Thu Aug 2 11:09:35 2007
--- comp.orig 2009-01-11 00:10:02.000000000 +0900
+++ comp 2009-05-08 12:12:09.000000000 +0900
@@ -9,11 +9,11 @@
# axp64,compaq-sc,cray-pvp,cray-t3e,cray-x1,cray-xd1,cray-xt3,
# fuji-pp32,fuji-pp64,hpux32,hpux64,ibm32,ibm64,ibm64-sp,ibm-bg,
# linux32,linux64,linux-ia64,mac32,macG5,necsx,
# linux32,linux64,linux-ia64,mac32,mac64,macG5,necsx,
-# sgi32,sgi64,sun32,sun64
+# sgi32,sgi64,sun32,sun64,freebsd-amd64,freebsd-i386
# 2. Choose your GAMESS directory tree.
@ -22,18 +22,18 @@
+if ($TARGET == freebsd-amd64) set OK=true
+if ($TARGET == freebsd-i386) set OK=true
if ($TARGET == mac32) set OK=true
if ($TARGET == mac64) set OK=true
if ($TARGET == macG5) set OK=true
if ($TARGET == necsx) set OK=true
@@ -108,6 +110,8 @@
if ($TARGET == linux-ia64) set BLAS3=true
@@ -110,6 +112,8 @@
if ($TARGET == mac32) set BLAS3=true
if ($TARGET == mac64) set BLAS3=true
if ($TARGET == macG5) set BLAS3=true
+if ($TARGET == freebsd-i386) set BLAS3=true
+if ($TARGET == freebsd-amd64) set BLAS3=true
if ($TARGET == sgi32) set BLAS3=true
if ($TARGET == sgi64) set BLAS3=true
if (($TARGET == sun32) && (-e /opt/SUNWspro/lib/libsunperf.so)) set BLAS3=true
@@ -491,6 +495,19 @@
@@ -493,6 +497,19 @@
if ($MODULE == iolib) setenv MACHIN '*UNX'
if ($MODULE == unport) setenv MACHIN '*INT'
endif
@ -53,7 +53,7 @@
if (($TARGET == mac32) || ($TARGET == macG5)) then
setenv MACHIN '*I32'
if ($MODULE == ddi) setenv MACHIN '*SOC'
@@ -1738,6 +1755,236 @@
@@ -1832,6 +1849,236 @@
#-- f77 -c $OPT -stackvar $MODULE.f
#-- unset echo
#--endif

10
science/gamess/files/patch-compall
View File

@ -1,9 +1,9 @@
--- compall.orig Wed Jul 11 05:00:13 2007
+++ compall Thu Aug 2 11:11:44 2007
--- compall.orig 2009-01-07 06:20:46.000000000 +0900
+++ compall 2009-05-08 12:14:14.000000000 +0900
@@ -10,11 +10,11 @@
# axp64,compaq-sc,cray-pvp,cray-t3e,cray-x1,cray-xd1,cray-xt3,
# fuji-pp32,fuji-pp64,hpux32,hpux64,ibm32,ibm64,ibm64-sp,ibm-bg,
# linux32,linux64,linux-ia64,mac32,macG5,necsx,
# linux32,linux64,linux-ia64,mac32,mac64,macG5,necsx,
-# sgi32,sgi64,sun32,sun64
+# sgi32,sgi64,sun32,sun64,freebsd-i386,freebsd-amd64
# 2. Choose your GAMESS directory tree.
@ -24,12 +24,12 @@
#
unset extraflags
if ($TARGET == axp64) set extraflags='-DCOMPAQ'
@@ -98,6 +100,8 @@
@@ -99,6 +101,8 @@
if (`uname -p` == x86_64) set extraflags='-DLINUX64 -m64'
if (`uname -p` == ia64) set extraflags='-DLINUX64' # its always 64 bits
endif
+if ($TARGET == freebsd-amd64) set extraflags='-DLINUX64 -m64'
+if ($TARGET == freebsd-i386) set extraflags='-DLINUX32'
if ($TARGET == mac32) set extraflags='-DLINUX32'
if ($TARGET == mac64) set extraflags='-DLINUX64 -m64 -I/usr/include/malloc'
if ($TARGET == macG5) set extraflags='-DLINUX32'
if ($TARGET == necsx) set extraflags='-DNECSX -size_t64'

14
science/gamess/files/patch-compddi
View File

@ -1,18 +1,18 @@
--- ddi/compddi.orig Wed Jul 11 05:01:19 2007
+++ ddi/compddi Thu Aug 2 11:13:19 2007
--- ddi/compddi.orig 2008-12-04 01:22:29.000000000 +0900
+++ ddi/compddi 2009-05-08 12:15:46.000000000 +0900
@@ -13,9 +13,9 @@
# axp64,compaq-sc,cray-pvp,cray-t3e,cray-x1,cray-xd1,cray-xt3,
# fuji-pp32,fuji-pp64,hpux32,hpux64,ibm32,ibm64,ibm64-sp,ibm-bg,
# linux32,linux64,linux-ia64,mac32,macG5,necsx,
# linux32,linux64,linux-ia64,mac32,mac64,macG5,necsx,
-# sgi32,sgi64,sun32,sun64
+# sgi32,sgi64,sun32,sun64,freebsd-i386,freebsd-amd64
#
- set TARGET = ibm64
+ set TARGET = %%ARCH%%
+ set TARGET = %%ARCH%%
# 2. Choose DDI communication layer, the only legal values are
# sockets,mixed,mpi,shmem,lapi,armci
@@ -638,7 +638,77 @@
@@ -639,7 +639,77 @@
set RANLIB_FLAGS = ' '
endif
@ -88,5 +88,5 @@
+
+ endif
# ------------------------- #
# Mac OS X (10.2 or 10.3) #
# -------- #
# Mac OS X #

25
science/gamess/files/patch-lked
View File

@ -1,9 +1,9 @@
--- lked.orig Wed Jul 11 05:00:02 2007
+++ lked Thu Aug 2 11:14:45 2007
--- lked.orig 2009-01-10 04:44:05.000000000 +0900
+++ lked 2009-05-08 12:18:46.000000000 +0900
@@ -12,11 +12,11 @@
# axp64,compaq-sc,cray-pvp,cray-t3e,cray-x1,cray-xd1,cray-xt3,
# fuji-pp32,fuji-pp64,hpux32,hpux64,ibm32,ibm64,ibm64-sp,ibm-bg,
# linux32,linux64,linux-ia64,mac32,macG5,necsx,
# linux32,linux64,linux-ia64,mac32,mac64,macG5,necsx,
-# sgi32,sgi64,sun32,sun64
+# sgi32,sgi64,sun32,sun64,freebsd-i386,freebsd-amd64
# 2. Choose your GAMESS directory tree.
@ -15,10 +15,11 @@
#
# ---- and now the script begins...
#
@@ -518,6 +518,23 @@
# MacIntosh, clauses for using g77 or xlf.
# If Atlas was downloaded, it may be a little faster than Apple's.
#
@@ -605,6 +605,23 @@
set VECTOR=' '
set QUICHE='zunix.o'
endif
+#FreeBSD settings
+if ($TARGET == freebsd-i386) then
+ set LDR=%%FC%%
+ set LDOPTS=''
@ -35,17 +36,17 @@
+ set VECTOR=' '
+ set QUICHE='zunix.o'
+endif
+
if ($TARGET == mac32) then
set LDR='g77'
set LDOPTS='-Wl,-multiply_defined -Wl,suppress' # add '-Wl,-M' for load map
@@ -627,12 +644,14 @@
#
if ($TARGET == necsx) then
set LDR='f90'
@@ -693,13 +710,15 @@
case linux32:
case linux64:
case linux-ia64:
+ case freebsd-amd64:
+ case freebsd-i386:
case mac32:
case mac64:
case macG5:
case sgi32:
case sun32:

59
science/gamess/files/patch-rungms
View File

@ -1,12 +1,12 @@
--- rungms.orig Wed Jun 6 17:03:07 2007
+++ rungms Wed Sep 26 14:31:55 2007
--- rungms.orig 2009-01-17 03:17:33.000000000 +0900
+++ rungms 2009-05-08 14:27:35.000000000 +0900
@@ -1,4 +1,4 @@
-#!/bin/csh
+#!/bin/csh -f
#
# 9 May 07 - MWS
# last update = 6 January 2009
#
@@ -54,7 +54,13 @@
@@ -55,7 +55,13 @@
# of using LoadLeveler via a "llgms" front end in ~/gamess/misc.
#
set TARGET=sockets
@ -21,7 +21,7 @@
#
set JOB=$1 # name of the input file xxx.inp, give only the xxx part
set VERNO=$2 # revision number of the executable created by 'lked' step
@@ -66,35 +72,45 @@
@@ -67,36 +73,29 @@
#
# ---- the top third of the script is input and other file assignments ----
#
@ -38,6 +38,7 @@
+#df -k $SCR
# this added as experiment, February 2007
# its intent is to detect large arrays allocated off the stack
-limit stacksize 8192
+#limit stacksize 8192
+
@ -70,27 +71,10 @@
- exit 4
- endif
-endif
+#if ($JOB:r.inp == $JOB) set JOB=$JOB:r # strip off possible .inp
+#if (-e $JOB.inp) then
+# set echo
+# cp $JOB.inp $SCR/$JOB.F05
+# unset echo
+#else
+# if (-e tests/$JOB.inp) then
+# set echo
+# cp tests/$JOB.inp $SCR/$JOB.F05
+# unset echo
+# else
+# echo "Input file $JOB.inp does not exist."
+# echo "This job expected the input file to be in directory `pwd`"
+# echo "Please fix your file name problem, and resubmit."
+# exit 4
+# endif
+#endif
# file assignments.
#
@@ -117,16 +133,16 @@
@@ -120,19 +119,20 @@
# d. see NEO plug-in code's documentation regarding the NUCBAS file.
# Note that you must edit a+b, but will probably skip c+d.
#
@ -104,7 +88,14 @@
setenv EXTBAS /dev/null
setenv NUCBAS /dev/null
#
-setenv IRCDATA ~$USER/scr/$JOB.irc
-setenv MAKEFP ~$USER/scr/$JOB.efp
-setenv GAMMA ~$USER/scr/$JOB.gamma
-setenv TRAJECT ~$USER/scr/$JOB.trj
-setenv RESTART ~$USER/scr/$JOB.rst
+setenv MAKEFP $SCR/scr/$JOB.efp
+setenv GAMMA $SCR/scr/$JOB.gamma
+setenv TRAJECT $SCR/scr/$JOB.trj
+setenv RESTART $SCR/scr/$JOB.rst
+setenv IRCDATA $SCR/$JOB.irc
setenv INPUT $SCR/$JOB.F05
-setenv PUNCH ~$USER/scr/$JOB.dat
@ -112,14 +103,12 @@
setenv AOINTS $SCR/$JOB.F08
setenv MOINTS $SCR/$JOB.F09
setenv DICTNRY $SCR/$JOB.F10
@@ -156,8 +172,8 @@
setenv SOINTY $SCR/$JOB.F32
setenv SOINTZ $SCR/$JOB.F33
setenv SORESC $SCR/$JOB.F34
-setenv SIMEN ~$USER/scr/$JOB.simen
-setenv SIMCOR ~$USER/scr/$JOB.simcor
+setenv SIMEN $SCR/$JOB.simen
+setenv SIMCOR $SCR/$JOB.simcor
setenv GCILIST $SCR/$JOB.F37
setenv HESSIAN $SCR/$JOB.F38
setenv SOCCDAT $SCR/$JOB.F40
@@ -308,7 +308,7 @@
if (null$4 == null) set ELGNAME=ELGFILE
set echo
setenv AOINTS $SCR/$ELGNAME.F08
- setenv ELGDOS ~$USER/scr/$JOB.ldos
+ setenv ELGDOS $SCR/$JOB.ldos
setenv ELGDAT $SCR/$ELGNAME.F71
setenv ELGPAR $SCR/$ELGNAME.F72
setenv ELGCUT $SCR/$ELGNAME.F74

2
science/gamess/pkg-plist
View File

@ -58,6 +58,8 @@ share/examples/gamess/exam39.inp
share/examples/gamess/exam40.inp
share/examples/gamess/exam41.inp
share/examples/gamess/exam42.inp
share/examples/gamess/exam43.inp
share/examples/gamess/exam44.inp
@dirrm bin/gms
@dirrm share/doc/gamess
@dirrm share/gamess/mcpdata