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science/py-trx-python: New port: Experiments with new file format for tractography

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This commit is contained in:
Yuri Victorovich 2023-12-17 10:01:42 -08:00
parent 4da4a21c34
commit f47c4702d3
4 changed files with 40 additions and 0 deletions
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1
science/Makefile
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@ -442,6 +442,7 @@
SUBDIR += py-thewalrus
SUBDIR += py-tobler
SUBDIR += py-trainstation
SUBDIR += py-trx-python
SUBDIR += py-tweedledum
SUBDIR += py-vedo
SUBDIR += py-veusz

34
science/py-trx-python/Makefile Normal file
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@ -0,0 +1,34 @@
PORTNAME= trx-python # this project is planned to be merged into DIPY (science/py-dipy)
DISTVERSION= 0.2.9
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Experiments with new file format for tractography
WWW= https://tee-ar-ex.github.io/trx-python/
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deepdiff>0:devel/py-deepdiff@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \
${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}packaging>=19.0:devel/py-packaging@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}setuptools_scm>=3.4:devel/py-setuptools_scm@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} # mistaken dependency, see https://github.com/tee-ar-ex/trx-python/issues/73
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flake8>=0:devel/py-flake8@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pytest-console-scripts>0:devel/py-pytest-console-scripts@${PY_FLAVOR}
USES= python
USE_PYTHON= pep517 cython autoplist pytest # few tests fail due to missing files
#USE_GITHUB= yes
#GH_ACCOUNT= tee-ar-ex
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
.include <bsd.port.mk>

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science/py-trx-python/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1702835339
SHA256 (trx-python-0.2.9.tar.gz) = 16b4104d7c991879c601f60e8d587decac50ce60388aae8d0c754a92136d1caf
SIZE (trx-python-0.2.9.tar.gz) = 86016

2
science/py-trx-python/pkg-descr Normal file
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@ -0,0 +1,2 @@
trx is a Python implementation of the trx file-format
for tractography data.