New port: biology/biosoup: Collection of C++ header-only data structures for bioinformatics

svn path=/head/; revision=562035

biology/Makefile

@@ -13,6 +13,7 @@
     SUBDIR += bioawk
     SUBDIR += biococoa
     SUBDIR += bioparser
+    SUBDIR += biosoup
     SUBDIR += bolt-lmm
     SUBDIR += bowtie
     SUBDIR += bowtie2

biology/biosoup/Makefile

@@ -0,0 +1,38 @@
+# $FreeBSD$
+
+PORTNAME=	biosoup
+DISTVERSION=	g20201216
+CATEGORIES=	biology devel
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Collection of C++ header-only data structures for bioinformatics
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+TEST_DEPENDS=	googletest>0:devel/googletest
+
+USES=		cmake
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	rvaser
+GH_TAGNAME=	e2b39f1
+
+NO_ARCH=	yes
+
+PLIST_FILES=	include/biosoup/nucleic_acid.hpp \
+		include/biosoup/overlap.hpp \
+		include/biosoup/progress_bar.hpp \
+		include/biosoup/sequence.hpp \
+		include/biosoup/timer.hpp
+
+do-install:
+	cd ${WRKSRC}/include && ${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PREFIX}/include
+
+do-test:
+	@cd ${BUILD_WRKSRC} && \
+		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -D${PORTNAME}_build_tests:BOOL=ON ${CMAKE_SOURCE_PATH} && \
+		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
+		${BUILD_WRKSRC}/bin/${PORTNAME}_test
+
+.include <bsd.port.mk>

biology/biosoup/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1611046547
+SHA256 (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = fe122e65d1691ca781584d8bb42538c5904852ccbb1ec48bc13aa2652b0f9ddc
+SIZE (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = 6979

biology/biosoup/pkg-descr

@@ -0,0 +1,4 @@
+Biosoup is a c++ collection of header only data structures used for storage and
+logging in bioinformatics tools.
+
+WWW: https://github.com/rvaser/biosoup