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Code Issues Releases Activity

- Update to 21.1.1

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This commit is contained in:
Wen Heping 2009-11-18 05:33:10 +00:00
parent 66835ad3c9
commit fad82e7fd4
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=244410
4 changed files with 17 additions and 29 deletions
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3
biology/fasta/Makefile
View File

@ -6,11 +6,10 @@
#
PORTNAME= fasta
PORTVERSION= 21.u1.d1
PORTVERSION= 21.1.1
CATEGORIES= biology
MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta2/ \
ftp://ftp.ebi.ac.uk/pub/software/unix/fasta/fasta2/
DISTNAME= fasta${PORTVERSION:S/.//g}
EXTRACT_SUFX= .shar.Z
MAINTAINER= ports@FreeBSD.org

6
biology/fasta/distinfo
View File

@ -1,3 +1,3 @@
MD5 (fasta21u1d1.shar.Z) = f7fefbcf6b07e546eed1a1c6df98821e
SHA256 (fasta21u1d1.shar.Z) = 9b45ffb0ba7111f398f03fffd77d8c823ced6756461ec96428dc36d88d6777f3
SIZE (fasta21u1d1.shar.Z) = 445052
MD5 (fasta-21.1.1.shar.Z) = c584979d6ba0772e0705a98decd0f55d
SHA256 (fasta-21.1.1.shar.Z) = 553da3c5ef3a9e9e37784c2dcd77982b664f501e10b57ab8c4dcfe99c5039c82
SIZE (fasta-21.1.1.shar.Z) = 461511

24
biology/fasta/files/patch-Makefile
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@ -1,16 +1,16 @@
--- Makefile.orig Sun May 7 22:29:14 2006
+++ Makefile Sun May 7 22:30:52 2006
--- Makefile.orig 2009-11-17 21:32:40.000000000 +0800
+++ Makefile 2009-11-17 21:33:55.000000000 +0800
@@ -2,14 +2,14 @@
# for SGI also use: -signed
#
-CC= cc -O
+#CC= cc -O
#CC=cc -g
#CC=insure -g
-CC= cc -O -g
+#CC= cc -O -g
#CC=cc -g -ansi -Wall
#CC= /usr/local/parasoft/bin.linux2/insure -g -DDEBUG
-CFLAGS= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN
+CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN
-CFLAGS= -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN
+CFLAGS+= -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN
LFLAGS= -lm -o
-BIN = /seqprg/bin
@ -18,12 +18,12 @@
#NRAND= nrand
#IBM RS/6000
#NRAND= nrand48
@@ -29,7 +29,7 @@
all : $(PROGS)
@@ -33,7 +33,7 @@
all : $(WPROGS)
install :
- cp $(PROGS) $(BIN)
+ $(BSD_INSTALL_PROGRAM) $(PROGS) $(BIN)
- cp $(WPROGS) $(BIN)
+ $(BSD_INSTALL_PROGRAM) $(WPROGS) $(BIN)
clean-up :
rm *.o $(PROGS)

13
biology/fasta/pkg-plist
View File

@ -11,22 +11,11 @@
%%PORTDOCS%%%%DOCSDIR%%/readme.v20u5
%%PORTDOCS%%%%DOCSDIR%%/readme.v20u6
%%PORTDOCS%%%%DOCSDIR%%/readme.v21u0
bin/aacomp
bin/align
bin/align0
bin/bestscor
bin/crandseq
bin/flalign
bin/fromgb
bin/chofas
bin/garnier
bin/grease
bin/lalign
bin/lfasta
bin/plalign
bin/plfasta
bin/psgrease
bin/randseq
bin/relate
bin/revcomp
bin/tgrease
%%PORTDOCS%%@dirrm %%DOCSDIR%%