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- Update to version 4.4.0
- Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
This commit is contained in:
Pawel Pekala
parent
4472e4fe42
commit
ff942cf270
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=306709
@ -2,31 +2,69 @@
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# $FreeBSD$
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PORTNAME= seaview
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PORTVERSION= 2006.02.13
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PORTREVISION= 9
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PORTVERSION= 4.4.0
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PORTEPOCH= 1
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CATEGORIES= biology
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MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
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DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g}
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EXTRACT_SUFX= .tar
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MASTER_SITES= http://pbil.univ-lyon1.fr/software/seaview_data/archive/
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DISTNAME= ${PORTNAME}_${PORTVERSION}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Multiple DNA/protein sequence alignment editor
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LIB_DEPENDS= fltk.1:${PORTSDIR}/x11-toolkits/fltk \
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pdf.6:${PORTSDIR}/print/pdflib
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LIB_DEPENDS= pthread-stubs:${PORTSDIR}/devel/libpthread-stubs \
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jpeg:${PORTSDIR}/graphics/jpeg \
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png15:${PORTSDIR}/graphics/png \
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freetype:${PORTSDIR}/print/freetype2 \
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expat:${PORTSDIR}/textproc/expat2 \
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fontconfig:${PORTSDIR}/x11-fonts/fontconfig \
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fltk:${PORTSDIR}/x11-toolkits/fltk \
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xcb:${PORTSDIR}/x11/libxcb
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NO_WRKSUBDIR= yes
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EXTRACT_CMD= ${CAT}
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EXTRACT_BEFORE_ARGS= #
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OPTIONS_DEFINE= PDFLIB
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OPTIONS_DEFAULT=PDFLIB
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PDFLIB_DESC= PDFlib support
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WRKSRC= ${WRKDIR}/${PORTNAME}
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USE_XORG= x11 xau xdmcp xext xft xinerama xrender
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USE_GMAKE= yes
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MAKE_ENV= HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \
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PHYMLNAME='-DPHYMLNAME=\"phyml\"' \
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IFLTK='-I${LOCALBASE}/include' \
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LFLTK='-L${LOCALBASE}/lib' \
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USE_XFT='-DUSE_XFT' \
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OPT="${CFLAGS}"
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ALL_TARGET= ${PORTNAME}
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MAKE_JOBS_SAFE= yes
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CFLAGS+= -D HAVE_DIRENT_H \
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-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
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DESKTOP_ENTRIES="${PORTNAME}" "${COMMENT}" "" "${PORTNAME}" \
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"Application;Science;Biology;" "true"
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PLIST_FILES= bin/seaview %%DATADIR%%/seaview.html
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PLIST_DIRS= %%DATADIR%%
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.include <bsd.port.options.mk>
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.if ${PORT_OPTIONS:MPDFLIB}
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LIB_DEPENDS+= pdf:${PORTSDIR}/print/pdflib
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MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf'
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.else
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MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF'
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.endif
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post-patch:
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@${REINPLACE_CMD} -e \
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's|^PDF_PS_FLAGS |#PDF_PS_FLAGS | ; \
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s|^FLTK |#FLTK | ; \
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s|^USE_XFT |#USE_XFT | ; \
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s|^CC |#CC | ; \
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s|^CXX |#CXX | ; \
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s|^OPT |#OPT | ; \
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s|-lpthread|${PTHREAD_LIBS}|' ${WRKSRC}/Makefile
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do-install:
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${INSTALL_PROGRAM} ${WRKDIR}/${PORTNAME} ${PREFIX}/bin
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${INSTALL_SCRIPT} ${WRKDIR}/seaview_align.sh ${PREFIX}/bin
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@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
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${INSTALL_DATA} ${WRKDIR}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
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${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${PREFIX}/bin
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@${MKDIR} ${DATADIR}
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${INSTALL_DATA} ${WRKSRC}/seaview.html ${DATADIR}
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.include <bsd.port.mk>
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@ -1,2 +1,2 @@
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SHA256 (seaview20060213.tar) = 3b6cd132a8c9c2d29881e3bcb14a85b9a52524a5974317a9df09d9e15ffc7776
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SIZE (seaview20060213.tar) = 573952
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SHA256 (seaview_4.4.0.tar.gz) = e1dcaef67cb93da63bfa6fa102042340297c18055928645f03defb6547e9ede3
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SIZE (seaview_4.4.0.tar.gz) = 309611
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@ -1,25 +0,0 @@
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--- Makefile.orig 2010-01-08 13:42:25.000000000 +0100
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+++ Makefile 2010-01-08 13:42:24.000000000 +0100
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@@ -1,18 +1,15 @@
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-FLTK = ../fltk
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-PDF = ../PDFlib-Lite-6.0.1/libs/pdflib
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-X11 = /usr/X11R6
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CXX = g++
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-CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include
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+CFLAGS+= -Dunix -U__APPLE__ -c $(OPT) `fltk-config --cflags`
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OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o
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seaview : $(OBJECTS)
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- $(CXX) -o $@ $(OBJECTS) -L$(FLTK)/lib -lfltk \
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- -Xlinker -Bstatic -L$(PDF)/.libs -lpdf -Xlinker -Bdynamic \
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- -L$(X11)/lib -lX11 -lm
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+ $(CXX) -o $@ $(OBJECTS) `fltk-config --ldflags` \
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+ -Xlinker -Bstatic -lpdf -Xlinker -Bdynamic \
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+ -L$(LOCALBASE)/lib -lX11 -lm
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strip $@
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@ -1,29 +0,0 @@
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--- use_mase_files.cxx.orig 2011-11-17 14:20:13.000000000 +0100
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+++ use_mase_files.cxx 2011-11-17 14:20:01.000000000 +0100
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@@ -1457,8 +1457,6 @@
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#else
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-extern "C" { int stat(char *, void *); }
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-
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int check_path(char *fname)
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/* to check for presence of file fname
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searching for it through all path directories
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@@ -1468,7 +1466,7 @@
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#define Mxdir 200
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char dir[Mxdir+1], *path, *deb, *fin;
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int lf, ltot;
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- static char stat_struct[250]; /* bigger than necessary */
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+ struct stat sb;
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path=getenv("PATH"); /* get the list of path directories,
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separated by :
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*/
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@@ -1488,7 +1486,7 @@
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dir[ltot]='/';
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strcpy(dir+ltot+1,fname);
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/* now dir is appended with filename */
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- if( stat(dir, stat_struct) == 0) return 0;
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+ if( stat(dir, &sb) == 0) return 0;
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}
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deb=fin+1;
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}
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@ -1,4 +0,0 @@
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bin/seaview
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bin/seaview_align.sh
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lib/X11/seaview/seaview.help
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@dirrm lib/X11/seaview
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