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Commit Graph

480 Commits

Author SHA1 Message Date
Li-Wen Hsu
a8dcd66e6e Add stp , a Decision Procedure for Bitvectors and Arrays. 2008-06-19 01:52:25 +00:00
Pav Lucistnik
8712d22249 - Delete expired port math/umfpack: outdated subset of math/sparsesuite 2008-06-18 22:52:56 +00:00
Pav Lucistnik
333c9da312 - Delete expired port math/sc: distfile disappeared 2008-06-18 22:38:36 +00:00
Li-Wen Hsu
cd5f0925eb Add py-networkx 0.36, tools for complex network.
PR:		ports/124620
Submitted by:	dikshie <dikshie AT sfc.wide.ad.jp>
2008-06-15 21:16:01 +00:00
Maho Nakata
fa9ee9fb77 The SDPA-GMP (The GMP version of SemiDefinite Programming Algorithm)
is a software package for solving semidefinite program (SDP), intended
for very hard to solve SDPs and SDPs requires ultra high accuracy.
It is based on a Mehrotra-type predictor-corrector infeasible
primal-dual interior-point method. The SDPA-GMP shares the same
features as the SDPA, excpt for calculations will be done
with multiple precision arithmetics via the GMP
(the GNU Multiple Precision Arithmetic Library).

WWW: http://sdpa.indsys.chuo-u.ac.jp/sdpa/index.html
2008-04-11 00:27:27 +00:00
Martin Wilke
82a46c8234 The TiMBL software package is a fast, decision-tree-based implementation
of k-nearest neighbor classification. The package includes the IB1, IB2,
TRIBL, TRIBL2, and IGTree algorithms, and offers various weighting metrics.

WWW: http://ilk.uvt.nl/timbl/

PR:		ports/121661
Submitted by:	Yuri Victorovich <yuri at tsoft.com>
2008-03-13 12:47:53 +00:00
Tilman Keskinoz
b7509990d6 Add Eigen a lightweight C++ template library for vector and matrix math 2008-02-09 21:59:20 +00:00
Tilman Keskinoz
2818b6fdd2 Add facile, a Functional Constraint Library written in Ocaml 2008-02-09 21:57:03 +00:00
Thomas Abthorpe
6ceda39d6b RAPID is a robust and accurate polygon interference detection library
for large environments composed of unstructured models.

WWW: http://www.cs.unc.edu/~geom/OBB/OBBT.html

PR:		ports/118556
Submitted by:	Jason W. Bacon <bacon at smithers.neuro.mcw.edu>
2008-02-09 01:59:37 +00:00
Martin Wilke
d26d67cc3d This is the Statistical T-Test module to compare 2 independentsamples.
It takes 2 array of point measures, compute the confidence intervals
using the PointEstimation module (which is also included in this package)
and use the T-statistic to test the null hypothesis. If the null hypothesis
is rejected, the difference will be given as the lower_clm and upper_clm of
the TTest object.

WWW:	http://search.cpan.org/dist/Statistics-TTest/

PR:		ports/119740
Submitted by:	dawe <daweonline at gmail.com>
2008-01-21 21:59:17 +00:00
Martin Wilke
6a5d9cfbdd This package lets you create and manipulate complex numbers. By default, Perl
limits itself to real numbers, but an extra use statement brings full complex
support, along with a full set of mathematical functions typically associated
with and/or extended to complex numbers.

WWW:	http://search.cpan.org/dist/Math-Complex/

PR:		ports/119441
Submitted by:	Jin-Shan Tseng <tjs at cdpa.nsysu.edu.tw>
2008-01-10 23:31:58 +00:00
Erwin Lansing
5275170f61 Hook vtk5 up to the build after repocopy. 2008-01-10 11:05:27 +00:00
Andrew Pantyukhin
6fae5726a0 Add port math/lybniz:
Lybniz is an easy to use mathematical function graph plotter
using pyGTK.

WWW: http://lybniz2.sourceforge.net/
2007-12-14 16:06:37 +00:00
Edwin Groothuis
108887fee1 New port: math/linux-SHA-1_collision_search_graz Distributed client
searching for weakness in SHA-1 hash

    SHA-1 Collision Search Graz is a distributed computing project
    -- people from through out the world download and run software
    to band together to make one of the largest supercomputers in
    the world. Every computer makes the project closer to our goals.

    The project is trying to see if like MD4 in 1996, MD5/RIPEMD
    in 2004, and the the direct predecessor SHA-0 in 2004 also,
    there is a weakness in the hash.

    WWW: http://boinc.iaik.tugraz.at/sha1_coll_search/

PR:			ports/116691
Submitted by:		Tuc <freebsd-ports@t-b-o-h.net>
2007-10-01 08:14:05 +00:00
Edwin Groothuis
7b49da83b6 new port: math/scilab-toolbox-sivp
Add new port scilab-toolbox-sivp --- Scilab Image and Video Processing toolbox.

PR:		ports/116372
Submitted by:	Max Brazhnikov <makc@issp.ac.ru>
2007-09-28 02:53:51 +00:00
Cheng-Lung Sung
0550947c83 This is a port of Clp (Coin-or linear programming), which is an open-source
linear programming solver written in C++. It is primarily meant to be used as
a callable library, but a basic, stand-alone executable version is also
included.

WWW: http://www.coin-or.org/Clp/index.html

PR:		ports/115185
Submitted by:	Robin Schilham
2007-09-05 01:59:36 +00:00
Renato Botelho
56dc0405c3 A S-Lang module to plot graphs using grace.
Grace is a popular plotting tool that produces publication quality
plots.  The S-Lang module interacts with grace via pipes.

WWW:	http://www.jedsoft.org/slang/modules/grace/index.html
2007-08-30 17:28:27 +00:00
Ion-Mihai Tetcu
f1d6e589bb SpeedCrunch is a multiplatform desktop calculator for power users.
It is designed to be enjoyed using keyboard. Result is shown in
scrollable display, history of expressions is available with up
and down arrow.

Some other features:
optional keypad, syntax highlight, matched parenthesis indicator,
just-in-time calculation (show result even before you finish typing)
and autocomplete for variables.

WWW: http://speedcrunch.digitalfanatics.org/

Note: Moved from science to math at danfe@'s request (no repocopy since there
is no history to preserve).

PR:		ports/114969
Submitted by:	Yinghong.Liu <relaxbsd at gmail.com>
2007-08-14 13:34:10 +00:00
Andrew Pantyukhin
ba4fc9043e Add port math/nyh-hoc:
Hoc, the High Order Calculator, is an interpreted language for
floating-point calculations. Its most basic use is as a powerful and
convenient calculator, interactively evaluating expressions such as
1+2*sin(0.7). But hoc is no ordinary calculator: It also lets you
assign values to variables, define your own functions, and use loops,
conditionals, and everything else you'd expect in a programming
language.

Hoc was developed by Brian Kernighan and Rob Pike, and introduced in
their 1984 book The Unix Programming Environment. This version has been
extended and improved by Nadav Y. Har'El.

WWW: http://nadav.harel.org.il/homepage/hoc/
Author: Nadav Y. Har'El <nadav@harel.org.il>
2007-08-13 20:20:40 +00:00
Chin-San Huang
1abf5da999 Remove deprecated port.
CVC Lite is no longer supported. Please use CVC3 (math/cvc3) for all your
validity checking needs.

Approved by:	rafan (mentor, implicit), lwhsu (maintainer)

2007-06-30 math/cvcl: CVC Lite is no longer supported. Please use CVC3 (math/cvc3) for all your validity checking needs!
2007-07-28 16:41:28 +00:00
Martin Wilke
a76bcaa600 This extension for PHP provides routines for manipulating bitsets.
WWW: http://pecl.php.net/package/Bitset

PR:		ports/114357
Submitted by:	Greg Larkin <glarkin at sourcehosting.net>
2007-07-07 14:57:49 +00:00
Martin Wilke
fdf638f9b9 ARIBAS is an interactive interpreter for big integer arithmetic and
multi-precision floating point arithmetic with a Pascal/Modula like
syntax. It has several builtin functions for algorithmic number
theory like gcd, Jacobi symbol, Rabin probabilistic prime test,
continued fraction and quadratic sieve factorization, Pollard rho
factorization, etc.

WWW: http://www.mathematik.uni-muenchen.de/~forster/sw/adownload.html

PR:		ports/113862
Submitted by:	Lars Engels <lars.engels at 0x20.net>
2007-06-20 14:04:09 +00:00
Martin Wilke
d82a36e6ac - Add math/qwtplot3d-qt4 - Qt4 version of QwtPlot3d
PR:		113255
Submitted by:	Max Brazhnikov <makc@issp.ac.ru> (maintainer)
Repocopied by:	marcus
2007-06-15 09:42:02 +00:00
Martin Wilke
992ae45169 Lens is an efficient, yet flexible, neural network simulator that runs on
a variety of platforms, is able to handle large, complex simulations, but
is also reasonably easy for novices to operate.

PR:		ports/112577
Submitted by:	Jason W. Bacon <bacon at smithers.neuro.mcw.edu>
2007-06-04 21:06:18 +00:00
Edwin Groothuis
9f82bdcd4e Move misc/gretl to math/gretl; add secondary category of finance
gretl is used in the mathematical analysis of time series,
	and has a functionality that is similar to various statistical
	and signal processing components of it++, octave, scilab,
	R, numpy/scipy, etc. -- most of which are in the math
	category.  It should really be placed there, rather than
	in misc.  In recognition of the fact that it implements
	some methods that are commonly (but not exclusively!) used
	in econometrics, it should also be given a secondary listing
	in finance.  (In my opinion, however, it shouldn't be given
	a primary listing in that category, because most of the
	ports there deal with the nuts-and-bolts of accounting,
	payment methods, taxes, and stock tracking.  To my knowledge,
	the only ports now in finance that remotely resemble gretl
	are quantlib, xtrader, and qtstalker, all of which employ
	simpler methods that are more specific to financial time
	series than are the more general methods in gretl.

PR:		ports/113052
Submitted by:	bf <bf2006a@yahoo.com>
2007-06-04 11:34:17 +00:00
Martin Wilke
2b01965527 A package that returns all the combinations and
permutations, without repitition, of a given set
and subset size. Associative arrays are preserved.

WWW: http://pear.php.net/package/Math_Combinatorics/

PR:		ports/112824
Submitted by:	Zhen REN <bg1tpt at gmail.com>
2007-05-29 16:12:27 +00:00
Thierry Thomas
87ca193ade The JTS Topology Suite is an API of 2D spatial predicates and functions. It has
the following design goals:

    * JTS conforms to the Simple Features Specification for SQL published by the
	Open GIS Consortium
    * JTS provides a complete, consistent, robust implementation of fundamental
	2D spatial algorithms
    * JTS is fast enough for production use
    * JTS is written in 100% pure Java(TM)
    * JTS is open source (under the LGPL license)

<http://www.vividsolutions.com/Jts/JTSHome.htm>
2007-05-28 13:15:29 +00:00
Lars Thegler
35335b8002 Add p5-bignum 0.21, transparent BigNumber/BigRational support for Perl. 2007-05-27 11:48:31 +00:00
Martin Wilke
6fba8aba61 Wcalc is a powerful arbitrary-precision calculator. It has standard functions
(sin, asinh, logtwo, floor, etc), many pre-defined constants (pi, e, c, etc.),
variables, "active" variables, command history, and hex/octal/binary i/o,
conversions, and more.

WWW: http://w-calc.sourceforge.net/

-Amarendra Godbole
amarendra.godbole@gmail.com

PR:		ports/112106
Submitted by:	Amarendra Godbole <amarendra.godbole at gmail.com>
2007-04-26 20:05:22 +00:00
Martin Wilke
9509460611 moo is a simple calculator that accepts C-like syntax as input.
Calculations are done on expr, if given. Otherwise, the standard input is used.

Numbers can be entered in hexadecimal (0xbeef), decimal (1984), octal (007),
and binary (0b1001). All numerical operators (+, -, *, /, %), bit operators
(|, ^, &, ~, <<, >>), and logical operators (==, !=, <, >, <=, >=, !, &&, ||)
are supported.

WWW: http://cyth.net/~ray/moo/

PR:		ports/111824
Submitted by:	Steven Kreuzer <skreuzer at f2o.org>
2007-04-19 10:48:07 +00:00
Cheng-Lung Sung
1cfd4012b3 Regression.pm is a multivariate linear regression package.
That is, it estimates the c coefficients for a line-fit of the type

      y= c(0)*x(0) + c(1)*x1 + c(2)*x2 + ... + c(k)*xk

given a data set of N observations, each with k independent x variables
and one y variable. Naturally, N must be greater than k---and preferably
considerably greater. Any reasonable undergraduate statistics book will
explain what a regression is. Most of the time, the user will provide a
constant ('1') as x(0) for each observation in order to allow the
regression package to fit an intercept.

WWW: http://search.cpan.org/dist/Statistics-Regression/
2007-04-07 03:02:00 +00:00
Maho Nakata
0d68246229 math/qd, a new port:
A Double-Double and Quad-Double Arithmetic library.
Double-double and quad-double numbers are unevaluated sum of
two and four IEEE doubles capable of representing 106 and 212 bits
of significand, respectively. The library is written in C++, taking full
advantage of operator overloading. C, Fortran 77, and Fortran 90 interfaces
are also provided.

This work was done at Lawrence Berkeley National Laboratory,
NERSC Division, Yozo Hida with Xiaoye S. Li and David H. Bailey.

WWW: http://www.cs.berkeley.edu/~yozo/
2007-03-27 02:36:33 +00:00
Cheng-Lung Sung
8fdb6ad4aa Add cvc3 1.0, an automatic theorem prover for the SMT problem.
PR:		ports/110770
Submitted by:	Li-Wen Hsu <lwhsu at lwhsu.org>
2007-03-25 04:04:30 +00:00
Martin Wilke
6f1e8de2b8 Fast Artificial Neural Network Library is a free open source neural network
library, which implements multilayer artificial neural networks in C with
support for both fully connected and sparsely connected networks.
Cross-platform execution in both fixed and floating point are supported. It
includes a framework for easy handling of training data sets. It is easy to
use, versatile, well documented, and fast. PHP, C++, .NET, Ada, Python, Delphi,
Octave, Ruby, Pure Data and Mathematica bindings are available. A reference
manual accompanies the library with examples and recommendations on how to use
the library. A graphical user interface is also available for the library.

WWW:	http://leenissen.dk/fann/

PR:		ports/109853
Submitted by:	Tz-Huan Huang <tzhuan at csie.org>
2007-03-06 19:15:43 +00:00
Rong-En Fan
cbee44fbaf Add p5-Math-NumberCruncher 5.00, collection of useful math-related
functions.

PR:		ports/109964
Submitted by:	chinsan
2007-03-06 13:59:09 +00:00
Gabor Kovesdan
eb35f9a303 Remove expired ports:
2007-02-01 math/vtk43-headers: Please use vtk 4.4 or 5.x.
2007-02-01 math/vtk43: Please use vtk 4.4 or 5.x.

Approved by:	erwin (mentor, implicit)
2007-02-18 19:01:44 +00:00
Anton Berezin
f8d67d1955 Add math/p5-Set-IntSpan-Fast 0.0.5, a Perl module for fast handling of
sets containing integer spans.
2007-02-15 20:44:56 +00:00
Maxime Henrion
27c870c2ea Add math/p5-Math-BigInt-GMP, a backend for the Math::BigInt module that
uses the C libgmp library for fast bignum computations.

Reviewed by:	tobez
2007-02-10 14:38:16 +00:00
Alex Dupre
430097dc13 Removed pear-Structures_Graph because now is in the base pear installation. 2007-02-09 09:07:44 +00:00
Maho Nakata
93f79f9f52 The GotoBLAS codes are currently the fastest implementations
of the Basic Linear Algebra Subroutines(BLAS; math/blas).
It supports various architectures.

WWW: http://www.tacc.utexas.edu/resources/software/

Based largely on: hrs's original port (thanks)
2007-02-06 00:43:02 +00:00
Martin Wilke
18c29c6a72 Msieve is a library and utility for factoring large integers using the most
powerful modern algorithms.  It features a stable and very fast implementation
of a self-initializing multiple polynomial quadratic sieve (MPQS), plus a
highly experimental and unfinished number field sieve (NFS) implementation.
Primary design goals are speed, portability and ease of use.  Msieve claims to
be the fastest implementation for factoring general inputs between 40 and 100
decimal digits.

Author: Jason Papadopoulos <jasonp@boo.net>
WWW: http://www.boo.net/~jasonp/qs.html

PR:		ports/107477
Submitted by:	Daniel Roethlisberger <daniel at roe.ch>
2007-01-05 07:58:52 +00:00
Rong-En Fan
99a2f588a8 Add py-bitvector 1.3, a pure-Python memory-efficient packed
representation for bit arrays.

PR:		ports/107251
Submitted by:	Li-Wen Hsu <lwhsu at lwhsu.org>
2006-12-27 19:55:22 +00:00
Rong-En Fan
ad9d2d7fe4 Add p5-Statistics-Forecast 0.2, calculates a future value.
PR:		ports/107146
Submitted by:	chinsan
2006-12-25 06:29:56 +00:00
Nicola Vitale
46fb0d3e7e Map data for the py-basemap port.
WWW: http://matplotlib.sourceforge.net/matplotlib.toolkits.basemap.basemap.html

PR:		ports/104315
Submitted by:	mainland at apeiron.net
Approved by:	alexbl (mentor)
2006-12-24 09:31:31 +00:00
Martin Wilke
d23f4f558c This module extends Python with a Graph class which is capable of handling
arbitrary directed and undirected graphs with thousands of nodes and millions
of edges. Since the module makes use of the open source igraph library
written in almost 100% pure C, it is blazing fast and outperforms most other
pure Python-based packages around.

WWW:	http://cneurocvs.rmki.kfki.hu/igraph

PR:		ports/106971
Submitted by:	Li-Wen Hsu <lwhsu at lwhsu.org>
2006-12-21 19:57:35 +00:00
Aaron Dalton
78c704ae27 Adding port math/p5-Statistics-Descriptive-Discrete, Compute descriptive
statistics for discrete data sets.

Submitted by:	aaron
2006-12-15 23:23:22 +00:00
Vasil Dimov
62c6fe0559 Remove expired ports:
2006-11-16 math/p5-AI-NeuralNet-Mesh: project no longer exists
2006-11-16 net/p5-Archie: project no longer exists
2006-11-15 www/mod_jk2: "JK2 is officially unsupported, no further development will take place."
2006-11-15 www/mod_jk2-apache2: "JK2 is officially unsupported, no further development will take place."
2006-11-21 09:08:44 +00:00
Cheng-Lung Sung
a0582a0efb Add p5-Math-Polynomial-Solve 2.10, find the roots of polynomial
equations.

PR:		ports/104710
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2006-11-02 14:24:46 +00:00
Cheng-Lung Sung
6918fd3101 Add p5-GIS-Distance 0.01001, calculate geographic distances.
PR:		ports/104695
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2006-11-02 13:59:51 +00:00
Alejandro Pulver
b38a0ef77b This is a program which can calculate with several martices.
It can multiplicate (by matrix or number), add, substract, invert,
transpose and get the determinant of matrices. And these calculations
can be done on matrices of any order.

It has two interfaces: GTK GUI and console-interface.

Morten Slot Kristensen <ontherenth@gmail.com>

WWW: http://mplus.dk/matrices/

PR:		ports/104983
Submitted by:	Morten Slot Kristensen
2006-11-01 20:26:08 +00:00