Maxim Sobolev
12df99274b
Update to 33.t08.d3.
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Submitted by: maintainer
2001-03-22 09:04:47 +00:00
Kevin Lo
57b28bc623
- Upgrade to version 1.70
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- Update WWW
PR: 25772
Submitted by: maintainer
2001-03-13 14:50:13 +00:00
Jun Kuriyama
f40cd4a088
Upgrade to 0.4.
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Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer)
PR: ports/25741
2001-03-13 02:03:47 +00:00
FUJISHIMA Satsuki
1dd0f3b3d8
o update to 2.7.2.
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o pass maintainership to ports@.
PR: 25685
Submitted by: maintainer
2001-03-12 19:16:15 +00:00
FUJISHIMA Satsuki
0977aef0a8
pass maintainership to ports@.
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PR: 25685
Submitted by: maintainer
2001-03-12 18:57:34 +00:00
Kevin Lo
124e7fc8d8
Update to lastest version
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PR: 25726
Submitted by: maintainer
2001-03-12 14:31:53 +00:00
Neil Blakey-Milner
5ff72b2dc1
Update the EMBOSS suite to v1.11.0
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PR: 25728
Submitted by: johann@egenetics.com
2001-03-12 10:33:50 +00:00
Neil Blakey-Milner
b1fd16c68d
- A small bugfix lead to a rerelease without a version number change.
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- Bumped PORTREVISION.
Submitted by: Johann Visagie <johann@egenetics.com>
PR: 25725
2001-03-12 10:24:38 +00:00
Trevor Johnson
4e48a033b1
Update to 0.85.
2001-03-12 08:35:23 +00:00
Trevor Johnson
0922168ea3
Force -O0 on the Alpha.
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Submitted by: steve
2001-03-12 08:33:42 +00:00
FUJISHIMA Satsuki
fb08a99b1a
fix WWW:
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PR: 25625
Submitted by: maintainer
2001-03-09 12:14:23 +00:00
FUJISHIMA Satsuki
f87f524546
update to 33.t08.d2.
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PR: 25609
Submitted by: maintainer
2001-03-08 14:39:10 +00:00
Ying-Chieh Liao
4b72e379d4
gd.2, not gd.1
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Submitted by: bento
2001-03-05 07:39:05 +00:00
Peter Pentchev
b561cf1b15
Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.
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PR: 25422
Submitted by: Marc van Woerkom <marc.vanwoerkom@science-factory.com>
2001-03-04 17:26:37 +00:00
Vanilla I. Shu
68c2f99c63
Remove do-configure section, use PERL_CONFIGURE now.
2001-03-01 06:39:18 +00:00
Kevin Lo
46974dd506
Update to version 1.10.1
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PR: 25449
Submitted by: maintainer
2001-02-28 15:58:11 +00:00
Ying-Chieh Liao
384048cae5
reimport biology/genpak
2001-02-28 02:46:51 +00:00
Ying-Chieh Liao
d87d30e484
module name conflict with print/gp, so remove it and I'll reimport it again
2001-02-28 02:43:22 +00:00
Ying-Chieh Liao
ca27237a16
add gp
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GP is a set of small utilities to manipulate DNA sequences
2001-02-27 17:22:29 +00:00
Kevin Lo
9b3eb6afbe
Update to version 1.10.0
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PR: 25228
Submitted by: MAINTAINER
2001-02-20 15:51:34 +00:00
Trevor Johnson
27973117c6
The author (at my request) has gone back to a more FreeBSD-friendly
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way of naming the distfile. Change the port accordingly.
2001-02-19 23:32:42 +00:00
Trevor Johnson
dd43b8b9db
Update to 0.84.
2001-02-19 15:53:46 +00:00
James E. Housley
9ac7f698c2
Update to version 2001-02-06
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PR: 25200
Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-19 12:32:57 +00:00
Akinori MUSHA
9e04885221
Chase graphics/gd's shlib version bump.
2001-02-12 10:01:08 +00:00
James E. Housley
a3686c5ead
- New port: biology/fasta3, which comprises the FASTA3 suite of DNA and
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protein sequence search programs
- FASTA3 updates only some of the elements of FASTA2, which is why I have
submitted ports of both versions (as biology/fasta and biology/fasta3)
PR: 24716
Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-11 16:28:59 +00:00
James E. Housley
c82fc94311
New port: biology/fasta, the FASTA2 suite of DNA and protein sequence
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search tools
PR: 24715
Submitted by: Johann Visagie <johann@egenetics.com>
2001-02-11 16:24:18 +00:00
FUJISHIMA Satsuki
d705c4a51d
add gaussian98, an ab-initio molecular orbital calculation program.
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PR: 23577
Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp>
2001-02-10 19:38:20 +00:00
Trevor Johnson
1491cd5a99
Update to 0.84a. Generate the plist.
2001-02-08 19:57:19 +00:00
Kevin Lo
f34ef8cc9c
- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1
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- Update the EMBASSY package EMNU from 1.0.2 to 1.0.3
- Merged the four pkg-plist* files into one
PR: 24717
Submitted by: MAINTAINER
2001-01-29 15:48:01 +00:00
Ying-Chieh Liao
5c6705c3ff
update from 3.7 to 3.8
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PR: 24371
Submitted by: MAINTAINER
2001-01-24 17:58:44 +00:00
Kevin Lo
dba8433b08
Upgrade to version 1.9.0
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PR: 24597
Submitted by: MAINTAINER
2001-01-24 11:36:37 +00:00
Maxim Sobolev
2b1a883dc4
Massive style enforcement - use ^I instead of spaces for variables identation.
2001-01-16 17:33:20 +00:00
Will Andrews
e40046b15d
Clean up inefficient perl invocations; use multiple REs in the same call.
2001-01-07 17:49:52 +00:00
Kevin Lo
3e1c5c9fe6
Update to 1.2.6
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PR: 23756
Submitted by: Ports Fury
2000-12-22 16:19:26 +00:00
Dmitry Sivachenko
0aafce6a70
Remove trailing period and package name from the pkg-comment.
2000-12-18 20:32:55 +00:00
Steve Price
7314b99412
Update to version 5.79.
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PR: 23345
Submitted by: Jeremy Shaffner <jeremy@external.org>
2000-12-11 03:10:04 +00:00
Peter Pentchev
bcd08c1529
Update distfiles' checksums after the distfiles have been rerolled yet
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again without changing names or versions. Also add a new MASTER_SITE.
PR: 23262
Submitted by: Johann Visagie <johann@egenetics.com>
2000-12-04 13:00:07 +00:00
Peter Pentchev
37d9887c8d
Distfile tarballs were rerolled without notice due to a minor bug.
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PR: 23193
Submitted by: Johann Visagie <johann@egenetics.com>
2000-11-30 20:13:30 +00:00
James E. Housley
c318e4acb5
- Update port biology/emboss from 1.7.0 to 1.8.0
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PR: 23130
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-28 01:43:39 +00:00
James E. Housley
824b95bb92
Make nolonger support :U. Fix to compensate for that.
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Submitted by: fenner
Approved by: MAINTAINER
2000-11-19 03:06:48 +00:00
James E. Housley
fcf874293c
They made changes to the "blast" program.
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Submitted by: MAINTAINER
2000-11-15 00:54:09 +00:00
James E. Housley
d1b418e214
- This is a fairly extensive rework of this port.
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- "EMBASSY" applications are third party tools which have been adapted to
function as part of EMBOSS, but which are not included with the base EMBOSS
distribution for licensing or other reasons. This new version of the
EMBOSS port now contains the three current EMBASSY applications as well,
and during installation the user is presented with a dialog(1) menu to
PR: 22818
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-13 13:49:46 +00:00
James E. Housley
7e4beec5d7
- This is a fairly extensive rework of this port.
...
- "EMBASSY" applications are third party tools which have been adapted to
function as part of EMBOSS, but which are not included with the base EMBOSS
distribution for licensing or other reasons. This new version of the
EMBOSS port now contains the three current EMBASSY applications as well,
and during installation the user is presented with a dialog(1) menu to
choose which of these should be isntalled.
PR: 22818
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-13 13:48:49 +00:00
Satoshi Asami
7112ba2b40
Change motif to a normal dependency. REQUIRES_MOTIF is now called
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USE_MOTIF and generates a LIB_DEPENDS to x11-toolkits/open-motif. As
before, it implies USE_XPM (and therefore USE_XLIB). Motif-dummy is
removed from PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3.
Most of the simple ".if defined(HAVE_MOTIF)"s are removed to always
have USE_MOTIF. ftp/moxftp will define USE_MOTIF unless
WANT_ATHENA_VERSION (new variable) is defined. I merged the X cases
in cad/mars, so USE_MOTIF is used iff WITHOUT_X11 is not defined.
I will remove x11-toolkits/Motif-dummy (which has been repo copied to
open-motif) in a few days.
2000-11-07 23:28:20 +00:00
James E. Housley
02f757ee30
Yes. They did re-roll this version, it is legit.
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They donot version the dist, but store them in versioned dir. Update
Makefile to handle that.
Update CHECKSUM
Submitted by: bento
2000-11-03 13:23:15 +00:00
James E. Housley
c1e58983d1
Updated to new version. That is the pits, the day after it becomes
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a port they release a new version. This is a new version, w/o a number.
PR: 22522
Submitted by: Tony Maher <tonym@dt.home> MAINTAINER
2000-11-02 11:25:47 +00:00
James E. Housley
11e55c6ac3
Make portlint happy, remove a space
2000-11-01 11:54:56 +00:00
James E. Housley
b3f3ffc1e9
Update to version 1.7.0
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PR: 22474
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
2000-11-01 11:49:08 +00:00
James E. Housley
a41f5ba0e2
File missing in pkg-plist
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Submitted by: bento
2000-10-30 15:36:57 +00:00
James E. Housley
72c15a6ba2
New Port: biology/ncbi-toolkit
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National Center for Biotechnology Information (NCBI) Development Toolkit.
PR: 22388
Submitted by: Tony Maher <tony.maher@ebioinformatics.com>
2000-10-29 13:56:24 +00:00