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3985 Commits

Author SHA1 Message Date
Antoine Brodin
b8796f0d82 Cleanup plists 2018-10-01 09:36:38 +00:00
Antoine Brodin
13902eede3 Cleanup plist 2018-10-01 06:30:37 +00:00
Jason W. Bacon
125ddd59f8 science/fsom: Fix build on GCC-based architectures 
PR:             231693
Submitted by:   Piotr Kubaj <pkubaj@anongoth.pl>
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D17366
 2018-09-30 21:41:44 +00:00
Yuri Victorovich
b920a8ff50 science/bagel: Fix build on 10 
Add USES=compiler:c++11-lang and USE_CXXSTD=c++11

Reported by:	fallout
 2018-09-30 21:11:48 +00:00
Yuri Victorovich
8cd6a57932 science/chemps2: Update 1.8.7 -> 1.8.8 
Reported by:	portscout
 2018-09-28 03:25:20 +00:00
Yuri Victorovich
705acbf574 textproc/py-pygments and science/paraview conflict each other 
Approved by:	portmgr blanket
 2018-09-28 02:41:25 +00:00
Antoine Brodin
bc40094c13 Mark BROKEN: wrong LIB_DEPENDS 2018-09-27 05:26:32 +00:00
Yuri Victorovich
860f875e6e science/clipper: Update 2.1.20180526 -> 2.1.20180802 
Reported by:	portscout
 2018-09-27 03:50:55 +00:00
Brooks Davis
3a34ffa58f Update Objective-C LLVM version to 6.0. 
Fixes aarch64 build.  Reduces depends on obsolete LLVM 4.0.

PR:		230116
Submitted by:	mikael.urankar@gmail.com
Approved by:	theraven (prior version)
Sponsored by:	DARPA, AFRL
 2018-09-26 15:23:37 +00:00
Yuri Victorovich
69662462b7 science/bagel: Correction 2018-09-25 19:57:58 +00:00
Yuri Victorovich
5e6e78c705 science/bagel: Remove the unnecessary line. 2018-09-25 18:56:13 +00:00
Yuri Victorovich
738b0ab803 New port: science/bagel: Brilliantly Advanced General Electronic-structure Library 2018-09-25 18:11:34 +00:00
Sunpoet Po-Chuan Hsieh
ba07671447 Change from MPICH2 to MPICH option 
- Bump PORTREVISION for dependency and package change

PR:		231634
Submitted by:	yuri
 2018-09-24 11:14:24 +00:00
Yuri Victorovich
2ac977ecb2 science/hypre: Change from net/mpich2 to net/mpich 
Reset maintainer on request of the mantainer (Pedro F. Giffuni).

PR:		231636
Approved by:	pfg (maintainer)
 2018-09-23 18:48:21 +00:00
Yuri Victorovich
86a598a701 New port: science/elk: All-electron full-potential linearised augmented-planewave code 2018-09-23 08:43:32 +00:00
Yuri Victorovich
08d4306e23 science/cp2k: Change from net/mpich2 -> net/mpich 2018-09-23 00:25:19 +00:00
Yuri Victorovich
607fe7ab86 Change 10 ports from net/mpich2 to net/mpich 
mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

science/triqs science/PETSc math/py-slepc4py math/slepc math/py-petsc4py
math/petiga math/sundials cad/elmerfem math/blocksolve95 math/spooles
 2018-09-22 17:40:41 +00:00
Yuri Victorovich
5f341a2ffb Change 20 ports from net/mpich2 to net/mpich 
mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
math/scalapack science/nwchem science/quantum-espresso science/qmcpack science/madness
science/qbox science/openmx science/jdftx science/fleur science/libgridxc
science/mdynamix science/lm science/dftbplus science/py-gpaw devel/ga
math/elpa net/charm science/gromacs math/pari math/arpack-ng-mpich
 2018-09-22 16:36:38 +00:00
Matthias Andree
d1cfeab07e Update ilmbase and openexr to 2.3.0, rename OpenEXR to openexr. 
Release notes: <https://github.com/openexr/openexr/releases/tag/v2.3.0>

Adjust LIB_DEPENDS of all ports that require ilmbase or openexr to chase
the new lower-case spelling of the name, and to omit the version from the
library name to ease future maintenance.

Bump PORTREVISION of all ports that depend on ilmbase or openexr directly,
so that they all get rebuilt on upgrades.

Add patches to graphics/ampasCTL to keep it alive, with (a) ilmbase now
that its Iex::BaseExc class is no longer derived from std::string,
details were given upstream through https://github.com/ampas/CTL/issues/71
and (b) to unwind semicolon/;-lists in cmake that stem from openexr/
ilmbase pkg-config variables.
(Note ampasCTL is unmaintained as FreeBSD port, and upstream,
and I cannot run-time test it.)

Poudriere build tests on 11.2-RELEASE-p1 amd64 of ALL ports depending
directly or indirectly on ilmbase and/or openexr have passed without
regressions.  Thus invoking due diligence, I believe I have done the
equivalent of an -exp run, and do not require approval for the dependency
chases to third-party ports.
 2018-09-22 10:15:22 +00:00
Yuri Victorovich
6963d4362f science/py-PyFR: Update dependencies: move one under the option option, add another one 2018-09-22 06:25:19 +00:00
Mark Linimon
aecf049634 Fix build on gcc-based archs by updating USES. 
Tested on powerpc64 and amd64 (for no regression).

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2018-09-22 05:30:31 +00:00
Yuri Victorovich
32d6580239 science/py-PyFR: Fix the OpenMP computation mode by adding -I and -L flags to the compiler command. 
Also fix license.
 2018-09-21 20:33:16 +00:00
Yuri Victorovich
62851afa29 science/py-chempy: python2 is deprecated for this version of chempy. 2018-09-21 17:59:14 +00:00
Yuri Victorovich
ec7eec7237 science/py-chempy: Update 0.7.2 -> 0.7.3 
Port changes:
* Add the EXTRAS option to install extra-dependencies
* Add the test target
 2018-09-21 07:53:46 +00:00
Yuri Victorovich
73f08980a8 New port: science/py-PyFR: Framework for solving advection-diffusion type problems 2018-09-21 07:11:11 +00:00
Sunpoet Po-Chuan Hsieh
e472251b2b Update to 1.4.0 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
 2018-09-20 19:28:05 +00:00
Sunpoet Po-Chuan Hsieh
a8d2090986 Update to 1.4.0 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
 2018-09-20 19:27:39 +00:00
Yuri Victorovich
c8621902a3 science/atompaw: Update 4.1.0.3 -> 4.1.0.4 
Reported by:	portscout
 2018-09-20 15:00:46 +00:00
Yuri Victorovich
61bffa7f7e science/py-chempy: Fix typos 
Reported by:	wen
 2018-09-19 23:50:31 +00:00
Yuri Victorovich
30937302da New port: science/py-chempy: Package useful useful for solving problems in chemistry 2018-09-19 21:33:18 +00:00
Yuri Victorovich
e5037d0364 science/py-spglib: Update 1.10.4.1 -> 1.10.4.11 
Reported by:	repology
 2018-09-19 18:35:55 +00:00
Mark Linimon
2f0d68299c Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based 
archs such as powerpc64.

Tested for no effect on amd64.

While here, pet portlint.

Approved by:	portgmr (tier-2 blanket)
 2018-09-18 09:28:34 +00:00
Mark Linimon
65bf94e134 Previous commit unbroke on powerpc64. 
While here, fix typo in other error message.

Approved by:	portmgr (tier-2 blanket)
 2018-09-18 08:21:26 +00:00
TAKATSU Tomonari
4976e87753 - Update to 0.4-3 2018-09-18 06:51:54 +00:00
Yuri Victorovich
dde65abe85 science/py-pymol: Update 2.1.0 -> 2.2.0 
Moved to GitHub.
Also update WWW.
 2018-09-17 20:48:45 +00:00
Yuri Victorovich
6fba07757d science/py-pymatgen: Update 2018.8.10 -> 2018.9.1 
Reported by:	repology
 2018-09-17 20:29:11 +00:00
Yuri Victorovich
3e4042c189 science/openmx: BROKEN on i386 pending the llvm bug resolution 
Reported by:	fallout
 2018-09-15 03:52:28 +00:00
Mathieu Arnold
3a22b4bff4 Never use ${FLAVOR} directly in dependencies, FLAVOR is not transitive. 2018-09-14 12:19:48 +00:00
Yuri Victorovich
0e801863ea science/cp2k: Require the option OPENMP=on in fftw3 for options OPENMP and OPENMP_MPI 
PR:		231163
Submitted by:	jhale
 2018-09-14 07:58:05 +00:00
Yuri Victorovich
152ffe3379 New port: science/luscus: Molecular editor and viewer 2018-09-14 07:44:45 +00:00
Yuri Victorovich
0f65d54cc4 New port: science/py-phono3py: Software to calculate phonon-phonon interaction and related properties 2018-09-14 05:37:12 +00:00
Yuri Victorovich
b2d6eb9888 New port: science/py-phonopy: Package for phonon calculations at harmonic and quasi-harmonic levels 2018-09-14 05:01:18 +00:00
Yuri Victorovich
7914b6d861 New port: science/py-molmod: Collection of molecular modelling tools for python 2018-09-14 03:10:59 +00:00
Yuri Victorovich
52d8ad5f01 science/dftbplus: Correct license; Correct patches 
Port changes:
* Change LICENSE to GPLv3: LGPL3+ combined with GPLv1+ yields GPLv3
* Remove some unnecessary patches, also correct patch, binaries don't change
 2018-09-13 19:16:12 +00:00
Yuri Victorovich
c2b454f0c8 science/dftbplus: Update license; Add the 'test' target; etc. 
Port changes:
* Fix the mistake in LICENSE
* Add the 'test' target, bundle the test potentials for it
* Update COMMENT to include a commonly known name for this package
* Pass build params via MAKE_ARGS, remove unnecessary patch related to this
* Add a patch to the makefile to print build parameters
 2018-09-13 17:38:23 +00:00
Yuri Victorovich
84fa976733 science/qbox: Update 1.66.1 -> 1.66.2 
Reported by:	portscout
 2018-09-13 06:34:49 +00:00
Yuri Victorovich
c76cf76a11 science/dftbplus: Fix ARPACK handling; Link with clang; etc 
* ARPACK option is for non-MPI build only
* Make it link using clang
* Add openmp dependency
 2018-09-13 00:26:41 +00:00
Yuri Victorovich
e8b751e04d New port: science/dftbplus: Package for performing fast atomistic simulations 2018-09-12 22:25:20 +00:00
Alexey Dokuchaev
da1e981b64 - Make NLS support optional 
- Add missing bits to USE_GNOME/USE_GL/USE_XORG per `stage-qa'
 2018-09-12 14:13:14 +00:00
Alexey Dokuchaev
39636e1acb - Update `science/gwyddion' to version 2.51 
- Explicitly disable building sample Pascal plug-ins, otherwise
  installed FPC ports would be detected and broken plist produced
- Conditionalize GConf dependency behind the option, but leave it
  enabled by default

Reported by:	portscout
 2018-09-12 08:43:58 +00:00