- Remove patches integrated upstream (it's nice to have direct contact)
- Sort USES and pkg-plist, cleanup Makefile a bit while here
Approved by: maintainer (implicit)
biology/phrab
biology/phred
biology/consed
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
PR: 191336
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
Please use USES=python instead of USE_PYTHON.
USE_PYTHON=yes becomes USES=python
USE_PYTHON=2.7+ becomes USES=python:2.7+
USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build
...
A new PYTHON_FEATURES variable was added, which enables certain features for a
port and replaces some knobs at the same time;
PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS
PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST
PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK
PYTHON_FEATURES=noegginfo replaces PYDISTUTILS_NOEGGINFO
PYTHON_FEATURES=concurrent replaces PYTHON_CONCURRENT_INSTALL
PYTHON_FEATURES=pythonprefix replaces USE_PYTHON_PREFIX
Some knobs have been deprecated and are to be removed in the near future:
PYTHON_MASTER_SITES - use MASTER_SITE_PYTHON instead
PYTHON_PKGNAMESUFFIX - use PYTHON_PKGNAMEPREFIX instead
PYDISTUTILS_INSTALLNOSINGLE - deprecated without replacement
Some knobs have been removed completely:
PYTHON_MASTER_SITE_SUBDIR
PYTHON_DISTNAME
PYTHON_WRKSRC
Several variables specific to the Python framework are no longer passed to the
build environment to avoid polluting dependency builds.
PYTHON_VERSION is not passed to .MAKEFLAGS anymore
PYTHON_DEFAULT_VERSION,
PYTHON_DEFAULT_PORTVERSION and
PYTHONBASE are not passed to the make environment anymore
The conversion required a couple of ports to be updated to fit the changes and
new requirements. Those included "bsd.python.mk" directly or contained checks
in places, for which the USES framework would fail to provide correct values.
Python modules directly using the upstream Python package (such as py-tkinter
or py-sqlite3) were updated to avoid using the now unnecessary and remmoved
knobs from "bsd.python.mk".
Phabric: D399
exp-run: 167368 192357
PR: 167368 192357
Reviewed by: antoine, wg
Exp-run award: antoine
With hat: python@
Approved by: portmgr
I don't think selecting clang as a function of OSVERSION is generally
desired, but if it's going to happen, make sure FreeBSD-specific
conditions are limited to FreeBSD by comparing OPSYS first.
The main problem was the WRKDIR is not within STAGEDIR. Fix this while
moving all the directory creation steps into one. While here
set TAR to use switches as outlined in its man page.
Also, the permission setting in stagedir is not necessary, so it's simply
been removed.
Where possible, correct a few instances where PORTDOCS was being used
to flag stuff in EXAMPLESDIR. For some ports, mostly those owned by
ruby@, PORTDOCS is applied to pretty much everything whether it's
documentation or example.
The distfiles are regenerated often, too frequently to be suitable for
ports. Fonz has decided to host the tarball of a known version to
restore this unmaintained port.
PR: 191685
Submitted by: Fonz
===> Configuring for p5-bioperl-run-1.6.1_4
Invalid prerequisite condition '0/processing XML data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at /usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702.
*** [do-configure] Error code 25
Reported by: pkg-fallout
With hat: portmgr
Sylvio's last commit was 17 months ago, a full 5 months after all of his
ports could have been reset per policy. Given the push to complete
staging (48 ports are still unstaged, something like 70+ have already
been staged by other committers) and given that PRs are automatically
assigned but never addressed, it's better just to reset all the ports and
PRs so that it's clear to others that these ports are free to maintain.
Approved by: portmgr (implicit)
