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Commit Graph

5286 Commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
35fd5ac623 Update to 0.8.1
Changes:	https://github.com/scikit-optimize/scikit-optimize/releases
2020-09-06 15:37:09 +00:00
Yuri Victorovich
b701bd1c1e science/py-gsd: Update 2.1.2 -> 2.2.0 2020-09-06 14:40:22 +00:00
Sunpoet Po-Chuan Hsieh
025a576c64 Update to 3.0.0
Changes:	https://github.com/rgeo/rgeo-shapefile/blob/master/History.md
2020-09-05 21:35:09 +00:00
Sunpoet Po-Chuan Hsieh
57054d9c6f Update to 0.8.0
Changes:	https://github.com/scikit-optimize/scikit-optimize/releases
2020-09-05 21:32:59 +00:00
Sunpoet Po-Chuan Hsieh
43beb4ac4c Update version requirement of RUN_DEPENDS 2020-09-05 21:32:55 +00:00
Sunpoet Po-Chuan Hsieh
788b672c62 Update to 2.5.0
Changes:	https://github.com/renatopp/liac-arff/releases
		https://github.com/renatopp/liac-arff/blob/master/CHANGES.rst
2020-09-05 10:10:15 +00:00
Yuri Victorovich
0050ec0b71 science/py-ase: Update 3.20.0 -> 3.20.1 2020-09-05 06:05:19 +00:00
Tobias C. Berner
a2cb94c52a Update KDE Applications (release-service) to 20.08.1 2020-09-03 14:48:14 +00:00
Fernando Apesteguía
931b35f008 science/afni: update to 20.2.16
Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"

Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:

"This program (3dAnatNudge) is old, obsolete, and not maintained!"

Reported by:	portscout
2020-09-03 07:16:21 +00:00
Yuri Victorovich
d5dfbe976b science/opensph: Use USE_WX instead of the LIB_DEPENDS with the WX library 2020-09-01 20:00:46 +00:00
Yuri Victorovich
dbb48d51ec x11-toolkits/wxgtk31: Update 3.1.3 -> 3.1.4
PR:		248244
Submitted by:	VVD <vvd@unislabs.com>
2020-09-01 18:12:20 +00:00
Sunpoet Po-Chuan Hsieh
b94e8d8c27 Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
Yuri Victorovich
1dda94b2a6 science/votca: Update 1.6.1 -> 1.6.2
Reported by:	portscout
2020-08-29 18:44:12 +00:00
Gleb Popov
f34025965b science/py-dlib: Fix plist.
Reported by:	pkg-fallout
2020-08-29 18:15:01 +00:00
Niclas Zeising
fd1baf6ba3 science/paraview: Fix build with -fno-common
Add a patch from upstream to fix the build of science/paraveiw with
-fno-common, which is the default with llvm 11.

MFH:		2020Q3 (implicit, -fno-common fixes, ok by joenum)
2020-08-29 17:15:19 +00:00
Tobias C. Berner
8b08b25842 science/fasthenry: fix build on recent current 2020-08-28 22:02:42 +00:00
Tobias C. Berner
3c1be8b5d0 science/fastcap: fix build on recent current 2020-08-28 22:00:33 +00:00
Tobias C. Berner
29ee96d0dc science/epte: fix build on recent current 2020-08-28 20:59:08 +00:00
Yuri Victorovich
08f604fb81 science/py-kim-query: Update 1.0.0 -> 1.1.0
Reported by:	portscout
2020-08-28 19:44:09 +00:00
Yuri Victorovich
1acd3d8241 science/pagmo2: Update 2.15.0-90 -> 2.15.0-95 2020-08-28 17:28:52 +00:00
Tobias C. Berner
f74a84eb18 science/cdcl: fix build on recent current 2020-08-28 16:09:15 +00:00
Sunpoet Po-Chuan Hsieh
99c9488fc8 Update to 2.41
Changes:	https://github.com/cjlin1/liblinear/commits/master
2020-08-27 18:43:36 +00:00
Tobias C. Berner
00e8afd2fd science/apbs: fix build on current
- upstream seems to have some fixes for gcc10, which could likely be backported (but failed to apply)
2020-08-27 18:37:59 +00:00
Rene Ladan
09df8f4601 Remove expired ports:
2020-08-26 audio/timidity++-tcltk: Broken for more than 6 months
2020-08-26 biology/pbcopper: Broken for more than 6 months
2020-08-26 devel/ace: Broken for more than 6 months
2020-08-26 devel/bin86: Broken for more than 6 months
2020-08-26 devel/erlang-oserl: Broken for more than 6 months
2020-08-20 emulators/qemu40: Please consider using qemu or qemu41
2020-08-26 games/linux-darwinia-demo: Broken for more than 6 months
2020-08-26 games/linux-defcon: Broken for more than 6 months
2020-08-26 games/linux-uplink-demo: Broken for more than 6 months
2020-08-26 games/xevil: Broken for more than 6 months
2020-08-26 games/xminesweep: Broken for more than 6 months
2020-08-26 graphics/backfract: Broken for more than 6 months
2020-08-26 japanese/kanjipad: Broken for more than 6 months
2020-08-26 japanese/xdtp: Broken for more than 6 months
2020-08-26 korean/hpscat: Broken for more than 6 months
2020-08-26 math/barvinok: Broken for more than 6 months
2020-08-26 math/openmesh: Broken for more than 6 months
2020-08-26 math/rehearse: Broken for more than 6 months
2020-08-26 net/hinfo: Broken for more than 6 months
2020-08-26 science/fleur: Broken for more than 6 months
2020-08-26 science/lm: Broken for more than 6 months
2020-08-26 security/ddos_scan: Broken for more than 6 months
2020-08-26 security/gag: Broken for more than 6 months
2020-08-26 security/py-keystone: Broken for more than 6 months
2020-08-26 sysutils/mono-kmod: mastersite disappeared, unfetchable
2020-08-26 x11-themes/gtk-cleanice-engine: Broken for more than 6 months
2020-08-26 x11-wm/aewm: Broken for more than 6 months
2020-08-27 11:25:47 +00:00
Yuri Victorovich
0aa71514e2 science/libcint: Update 3.0.20 -> 3.1.1
Reported by:	portscout
2020-08-27 05:37:22 +00:00
Yuri Victorovich
2966b2d61b science/lammps: Update 21Aug2020 -> 24Aug2020
Reported by:	GitHub notification
2020-08-25 01:38:41 +00:00
Piotr Kubaj
4158123bdf science/hdf: update to 4.2.15 to fix build on powerpc64
Newest version builds on powerpc64 just fine.

MFH:		2020Q3 (fix build blanket)
2020-08-22 20:43:44 +00:00
Fernando Apesteguía
94e7535860 science/afni: update to 20.2.14
Reported by:	portscout
2020-08-22 17:32:58 +00:00
Gleb Popov
7c41340d5d science/py-dlib: Fix plist for non-default python flavors.
Reported by:	pkg-fallout
2020-08-22 08:57:40 +00:00
Yuri Victorovich
60a48b1afc science/lammps: Update 21Jul2020 -> 21Aug2020
Reported by:	GitHub notification
2020-08-21 23:15:38 +00:00
Sunpoet Po-Chuan Hsieh
ad3c6c6d55 Update to 2.7.1
Changes:	https://github.com/spacetelescope/asdf/releases
2020-08-21 21:24:31 +00:00
Fernando Apesteguía
5d90c6cf0c science/afni: update to 20.2.13
Reported by:	portscout
2020-08-20 15:57:33 +00:00
Gleb Popov
7757f30c02 science/dlib-cpp and science/py-dlib: Update to 19.21. 2020-08-20 09:50:18 +00:00
Yuri Victorovich
d1b554bdbb science/py-moltemplate: Update 2.18.2 -> 2.18.3
Reported by:	portscout
2020-08-20 03:20:53 +00:00
Yuri Victorovich
8bc65780d3 science/jmol: Update 14.31.2 -> 14.31.3
Reported by:	portscout
2020-08-20 02:31:43 +00:00
Fernando Apesteguía
aeca496bae science/afni: update to 20.2.12
Reported by:	portscout
2020-08-19 10:46:33 +00:00
Piotr Kubaj
e6afd54dcf science/simgrid: fix build on non-aarch64, non-x86
Add libunwind to LIB_DEPENDS only on aarch64, amd64 and i386. Port builds fine without it on powerpc64

MFH:		2020Q3 (fix build blanket)
2020-08-19 09:23:36 +00:00
Yuri Victorovich
fb2a9880ed science/tinker: Update 8.7.2 -> 8.8.1
Reported by:	portscout
2020-08-17 20:37:46 +00:00
Yuri Victorovich
71928f3f98 science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1
Reported by:	portscout
2020-08-17 20:05:58 +00:00
Piotr Kubaj
9fbd9bcd26 science/code_saturne: fix build on GCC architectures
Use C++11 compiler:
cs_paramedmem_remapper.cxx:124: error: ISO C++ forbids initialization of member '_sphere_cen'

Define __XSI_VISIBLE to make gettimeofday() available.

MFH:		2020Q3 (fix build blanket)
2020-08-17 15:33:42 +00:00
Rene Ladan
852843be76 science/py-mdp: remove optional expired dependency on devel/py-pp 2020-08-15 11:19:52 +00:00
Rene Ladan
b6cb229310 Remove deprecated ports:
2020-08-15 archivers/py-backports.lzma: Uses deprecated version of python
2020-08-15 archivers/py-bup: Uses deprecated version of python
2020-08-15 archivers/py-librtfcomp: Uses deprecated version of python
2020-08-15 audio/blop-lv2: Uses deprecated version of python
2020-08-15 audio/bs2b-lv2: Uses deprecated version of python
2020-08-15 audio/py-gmusicproxy: Uses deprecated version of python
2020-08-15 audio/py-karaoke: Uses deprecated version of python
2020-08-15 audio/py-openal: Uses deprecated version of python
2020-08-15 audio/py-py-jack: Uses deprecated version of python
2020-08-15 audio/py-xmms2: Uses deprecated version of python
2020-08-15 audio/triceratops-lv2: Uses deprecated version of python
2020-08-15 biology/py-biom-format: Uses deprecated version of python
2020-08-15 comms/py-bulksms: Uses deprecated version of python
2020-08-15 comms/py-gammu: Uses deprecated version of python
2020-08-15 databases/py-geoalchemy: Uses deprecated version of python
2020-08-15 databases/py-htsql-mysql: Uses deprecated version of python
2020-08-15 databases/py-htsql-pgsql: Uses deprecated version of python
2020-08-15 databases/py-mysql2pgsql: Uses deprecated version of python
2020-08-15 databases/py-oursql: Uses deprecated version of python
2020-08-15 databases/py-pyPgSQL: Uses deprecated version of python
2020-08-15 databases/py-pyhs: Uses deprecated version of python
2020-08-15 databases/py-pytc: Uses deprecated version of python
2020-08-15 databases/py-riak: Uses deprecated version of python
2020-08-15 databases/py-umemcache: Uses deprecated version of python
2020-08-15 devel/py-Breve: Uses deprecated version of python
2020-08-15 devel/py-PyODE: Uses deprecated version of python
2020-08-15 devel/py-akismet: Uses deprecated version of python
2020-08-15 devel/py-aspects: Uses deprecated version of python
2020-08-15 devel/py-backports.tempfile: Uses deprecated version of python
2020-08-15 devel/py-backports.weakref: Uses deprecated version of python
2020-08-15 devel/py-cfgparse: Uses deprecated version of python
2020-08-15 devel/py-ciphon: Uses deprecated version of python
2020-08-15 devel/py-cjson: Uses deprecated version of python
2020-08-15 devel/py-clonedigger: Uses deprecated version of python
2020-08-15 devel/py-cuisine: Uses deprecated version of python
2020-08-15 devel/py-deliciousapi: Uses deprecated version of python
2020-08-15 devel/py-dialog: Uses deprecated version of python
2020-08-15 devel/py-efl: Uses deprecated version of python
2020-08-15 devel/py-ezpyinline: Uses deprecated version of python
2020-08-15 devel/py-fsm: Uses deprecated version of python
2020-08-15 devel/py-gdbgui: Uses deprecated version of python
2020-08-15 devel/py-gearman: Uses deprecated version of python
2020-08-15 devel/py-generate: Uses deprecated version of python
2020-08-15 devel/py-geotypes: Uses deprecated version of python
2020-08-15 devel/py-gitosis: Uses deprecated version of python
2020-08-15 devel/py-google-apputils: Uses deprecated version of python
2020-08-15 devel/py-hghooks: Uses deprecated version of python
2020-08-15 devel/py-instant: Uses deprecated version of python
2020-08-15 devel/py-jcc: Uses deprecated version of python
2020-08-15 devel/py-json-py: Uses deprecated version of python
2020-08-15 devel/py-json-sempai: Uses deprecated version of python
2020-08-15 devel/py-jsonlib: Uses deprecated version of python
2020-08-15 devel/py-jsonlib2: Uses deprecated version of python
2020-08-15 devel/py-jsonrpclib: Uses deprecated version of python
2020-08-15 devel/py-kayako: Uses deprecated version of python
2020-08-15 devel/py-kid: Uses deprecated version of python
2020-08-15 devel/py-kjbuckets: Uses deprecated version of python
2020-08-15 devel/py-kqueue: Uses deprecated version of python
2020-08-15 devel/py-log4py: Uses deprecated version of python
2020-08-15 devel/py-mwlib.ext: Uses deprecated version of python
2020-08-15 devel/py-mx-experimental: Uses deprecated version of python
2020-08-15 devel/py-option_merge: Uses deprecated version of python
2020-08-15 devel/py-prioritized_methods: Uses deprecated version of python
2020-08-15 devel/py-protocols: Uses deprecated version of python
2020-08-15 devel/py-ptrace: Uses deprecated version of python
2020-08-15 devel/py-pydoop: Uses deprecated version of python
2020-08-15 devel/py-pyke: Uses deprecated version of python
2020-08-15 devel/py-pymtbl: Uses deprecated version of python
2020-08-15 devel/py-pyshapelib: Uses deprecated version of python
2020-08-15 devel/py-pytemplate: Uses deprecated version of python
2020-08-15 devel/py-python2-pythondialog: Uses deprecated version of python
2020-08-15 devel/py-pyutil: Uses deprecated version of python
2020-08-15 devel/py-pyvalid: Uses deprecated version of python
2020-08-15 devel/py-pyxml2obj: Uses deprecated version of python
2020-08-15 devel/py-qpid: Uses deprecated version of python
2020-08-15 devel/py-repoze.what-pylons: Uses deprecated version of python
2020-08-15 devel/py-repoze.who-friendlyform: Uses deprecated version of python
2020-08-15 devel/py-robotframework-ride: Uses deprecated version of python
2020-08-15 devel/py-ruamel.ordereddict: Uses deprecated version of python
2020-08-15 devel/py-sanetime: Uses deprecated version of python
2020-08-15 devel/py-selectors34: Uses deprecated version of python
2020-08-15 devel/py-sqlcc: Uses deprecated version of python
2020-08-15 devel/py-statgrab: Uses deprecated version of python
2020-08-15 devel/py-tconfpy: Uses deprecated version of python
2020-08-15 devel/py-terminable_thread: Uses deprecated version of python
2020-08-15 devel/py-trace2html: Uses deprecated version of python
2020-08-15 devel/py-tvrage: Uses deprecated version of python
2020-08-15 devel/py-tw.forms: Uses deprecated version of python
2020-08-15 devel/py-uncompyle2: Uses deprecated version of python
2020-08-15 devel/py-yum-metadata-parser: Uses deprecated version of python
2020-08-15 devel/rubygem-warden127: No longer needed
2020-08-15 dns/py-dnschain: Uses deprecated version of python
2020-08-15 dns/py-idnkit2: Uses deprecated version of python
2020-08-15 games/colobot: Uses deprecated version of python
2020-08-15 games/endgame-singularity: Uses deprecated version of python
2020-08-15 games/katawa-shoujo: Uses deprecated version of RenPy
2020-08-15 games/pyfa: Uses deprecated version of python
2020-08-15 games/renpy6: Uses deprecated version of python
2020-08-15 games/solarwolf: Uses deprecated version of python
2020-08-15 games/thudboard: Uses deprecated version of python
2020-08-15 graphics/djvusmooth: Uses deprecated version of python
2020-08-15 graphics/py-glewpy: Uses deprecated version of python
2020-08-15 graphics/py-openexr: Uses deprecated version of python
2020-08-15 graphics/py-poppler: Uses deprecated version of python
2020-08-15 graphics/py-pygooglechart: Uses deprecated version of python
2020-08-15 graphics/py-sane: Uses deprecated version of python
2020-08-15 graphics/py-stltools: Uses deprecated version of python
2020-08-15 graphics/sk1: Uses deprecated version of python
2020-08-15 japanese/py-mecab: Uses deprecated version of python
2020-08-15 japanese/py-tegaki-gtk: Uses deprecated version of python
2020-08-15 lang/py-mx-base: Uses deprecated version of python
2020-08-15 mail/mailpile: Uses deprecated version of python
2020-08-15 math/py-ffc: Uses deprecated version of python
2020-08-15 math/py-fiat: Uses deprecated version of python
2020-08-15 math/py-nzmath: Uses deprecated version of python
2020-08-15 math/py-pymc: Uses deprecated version of python
2020-08-15 math/py-ufl: Uses deprecated version of python
2020-08-15 misc/py-socli: Uses deprecated version of python
2020-08-15 misc/py-yolk: Uses deprecated version of python
2020-08-15 multimedia/py-flvlib: Uses deprecated version of python
2020-08-15 net/py-gspreadsheet: Uses deprecated version of python
2020-08-15 net/py-libnet: Uses deprecated version of python
2020-08-15 net/py-netlib: Uses deprecated version of python
2020-08-15 net/py-pynmsg: Uses deprecated version of python
2020-08-15 net/py-rainbowstream: Uses deprecated version of python
2020-08-15 net/py-wolframalpha: Uses deprecated version of python
2020-08-15 net-im/empathy: Uses deprecated version of python
2020-08-15 net-im/farsight2: Uses deprecated version of python
2020-08-15 net-im/py-xmpppy: Uses deprecated version of python
2020-08-15 net-im/telepathy-farsight: Uses deprecated version of python
2020-08-15 net-im/telepathy-python: Uses deprecated version of python
2020-08-15 net-im/telepathy-rakia: Uses deprecated version of python
2020-08-15 net-mgmt/py-pynsca: Uses deprecated version of python
2020-08-15 net-mgmt/py-yapsnmp: Uses deprecated version of python
2020-08-15 net-p2p/py-py2play: Uses deprecated version of python
2020-08-15 news/py-yenc: Uses deprecated version of python
2020-08-15 print/py-pyscript: Uses deprecated version of python
2020-08-15 print/py-stapler: Uses deprecated version of python
2020-08-15 print/py-trml2pdf: Uses deprecated version of python
2020-08-15 science/py-PyQuante: Uses deprecated version of python
2020-08-15 science/py-mlpy: Uses deprecated version of python
2020-08-15 science/py-ws2300: Uses deprecated version of python
2020-08-15 security/py-PF: Uses deprecated version of python
2020-08-15 security/py-cracklib: Uses deprecated version of python
2020-08-15 security/py-fteproxy: Uses deprecated version of python
2020-08-15 security/py-onetime: Uses deprecated version of python
2020-08-15 security/py-pydeep: Uses deprecated version of python
2020-08-15 security/py-slowaes: Uses deprecated version of python
2020-08-15 security/py-sslstrip: Uses deprecated version of python
2020-08-15 security/py-volatility: Uses deprecated version of python
2020-08-15 sysutils/py-analyzemft: Uses deprecated version of python
2020-08-15 sysutils/py-cdmi: Uses deprecated version of python
2020-08-15 sysutils/py-ezjailremote: Uses deprecated version of python
2020-08-15 sysutils/py-gmailfs-fuse: Uses deprecated version of python
2020-08-15 sysutils/py-ploy_ec2: Uses deprecated version of python
2020-08-15 sysutils/py-ploy_fabric: Uses deprecated version of python
2020-08-15 sysutils/py-scriptine: Uses deprecated version of python
2020-08-15 sysutils/py-superlance: Uses deprecated version of python
2020-08-15 textproc/py-bugzillatools: Uses deprecated version of python
2020-08-15 textproc/py-elib.intl: Uses deprecated version of python
2020-08-15 textproc/py-errorhandler: Uses deprecated version of python
2020-08-15 textproc/py-hyperestraier-python: Uses deprecated version of python
2020-08-15 textproc/py-pyes: Uses deprecated version of python
2020-08-15 textproc/py-pyhwp: Uses deprecated version of python
2020-08-15 textproc/py-sphinx_numfig: Uses deprecated version of python
2020-08-15 www/py-HTMLgen: Uses deprecated version of python
2020-08-15 www/py-albatross: Uses deprecated version of python
2020-08-15 www/py-amf: Uses deprecated version of python
2020-08-15 www/py-apachelog: Uses deprecated version of python
2020-08-15 www/py-aws-requests-auth: Uses deprecated version of python
2020-08-15 www/py-clientform: Uses deprecated version of python
2020-08-15 www/py-django-appmedia: Uses deprecated version of python
2020-08-15 www/py-django-evolution: Uses deprecated version of python
2020-08-15 www/py-fedex: Uses deprecated version of python
2020-08-15 www/py-formalchemy: Uses deprecated version of python
2020-08-15 www/py-frappe-bench: Uses deprecated version of python
2020-08-15 www/py-funkload: Uses deprecated version of python
2020-08-15 www/py-goobook: Uses deprecated version of python
2020-08-15 www/py-poster: Uses deprecated version of python
2020-08-15 www/py-pyquery: Uses deprecated version of python
2020-08-15 www/py-pysearch: Uses deprecated version of python
2020-08-15 www/py-pywebdav: Uses deprecated version of python
2020-08-15 www/py-slimmer: Uses deprecated version of python
2020-08-15 www/py-surl: Uses deprecated version of python
2020-08-15 www/py-tmdb3: Uses deprecated version of python
2020-08-15 www/py-trello: Uses deprecated version of python
2020-08-15 www/py-uliweb: Uses deprecated version of python
2020-08-15 www/py-wsgiauth: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wax: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wxPython-common: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wxPython28-common: Uses deprecated version of python
2020-08-15 10:50:58 +00:00
Yuri Victorovich
c961d8783f science/dvc: Remove the 2.7 python limitation because the cuplrit dependency is now python3-compatible 2020-08-13 20:23:18 +00:00
Tobias C. Berner
0edfaee1ed KDE's August 2020 Apps Update
Dozens of KDE apps are getting new releases from KDE’s release service. New
features, usability improvements, re-designs and bug fixes all contribute to
helping boost your productivity and making this new batch of applications more
efficient and pleasant to use.

Full announcement:
        https://kde.org/announcements/releases/2020-08-apps-update/
2020-08-13 17:10:30 +00:00
Fernando Apesteguía
169892aa75 science/afni: update to 20.2.11
Reported by:	portscout
2020-08-13 05:44:11 +00:00
Yuri Victorovich
e7e67c6eaf science/py-ase: Update 3.19.2 -> 3.20.0
Reported by:	portscout
2020-08-10 23:52:38 +00:00
Danilo Egea Gondolfo
4f0b08c19f - Update math/armadillo to 9.900.2 2020-08-10 13:12:01 +00:00
TAKATSU Tomonari
58c431e5b0 - Update to 2.41 2020-08-10 08:08:06 +00:00
Yuri Victorovich
be32d0751e science/py-phonopy: Update 2.5.0 -> 2.7.1
Reported by:	portscout
2020-08-05 19:17:19 +00:00
Dmitry Marakasov
80c9c3936b - Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)
- Convert patching to options helpers, silence, fix whitespace and make more future proof

Approved by:	portmgr blanket
2020-08-04 16:00:43 +00:00