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18 Commits

Author SHA1 Message Date
Rene Ladan
620968a43a cleanup: drop support for EOL FreeBSD 11.X 
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
 2021-09-30 23:23:30 +02:00
Yuri Victorovich
70ea3d2756 biology/igv: Broken on 11 
Reported by:	fallout
 2021-08-21 12:08:05 -07:00
Guangyuan Yang
68a87e3c5a biology/igv: Fix build 
When switching the build dependency from devel/gradle to devel/gradle6,
the build is accidentally broken. This attempts to revert part of the
change and fix build.

Fixes:		55044a2200
Approved by:	lwhsu (mentor, implicit), portmgr (fix build)
 2021-06-27 05:33:51 -04:00
Guangyuan Yang
55044a2200 devel/gradle6: New port 
devel/gradle needs to be updated to 7.x, while some ports build failed
under the newer version, including:

- biology/jalview
- biology/igv

Updated them to use this devel/gradle6 until they officially support 7.x.
No functional changes for these ports.

Approved by:	lwhsu (mentor)
 2021-06-26 21:51:07 -04:00
Mathieu Arnold
cf118ccf87
One more small cleanup, forgotten yesterday. 
Reported by:	lwhsu
 2021-04-07 10:09:01 +02:00
Mathieu Arnold
305f148f48
Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
Yuri Victorovich
d66a1aba3d biology/igv: Update 2.8.13 -> 2.9.4 2021-03-28 16:41:33 +00:00
Yuri Victorovich
46be868baa biology/igv: Fix fetch by fixing a small left-over mistake 
PR:		250980
Reported by:	jwb
 2020-11-30 17:29:48 +00:00
Yuri Victorovich
24ab3a884b biology/igv: 2.5.3 -> 2.8.13 
PR:		250980
 2020-11-30 01:06:37 +00:00
Tobias Kortkamp
7a80d0bf6c Deprecate java/openjfx8-devel consumers 
Chase r527795 and put a deprecation notice on all openjfx8-devel
dependent ports too.

Also deprecate devel/gradle4 which is only needed to build igv and
openjfx8-devel.
 2020-03-19 09:33:13 +00:00
Yuri Victorovich
be0311dc43 biology/igv: Update 2.5.2 -> 2.5.3 
Reported by:	portscout
 2019-06-01 20:49:20 +00:00
Yuri Victorovich
8d1988e52d biology/igv: Update 2.5.0 -> 2.5.2 
Reported by:	portscout
 2019-05-11 05:59:29 +00:00
Yuri Victorovich
cdb89c131b biology/igv: Update 2.4.19 -> 2.5.0 
Reported by:	portscout
 2019-04-04 04:49:41 +00:00
Yuri Victorovich
4bacbfd1cc biology/igv: Update 2.4.16 -> 2.4.19 
Reported by:	portscout
 2019-02-23 21:23:51 +00:00
Yuri Victorovich
1d5163c9b6 devel/gradle: Update to 5.0 
Change biology/igv and biology/gatk to gradle4 due to build failures with gradle5.

PR:		233623
Approved by:	gasol.wu@gmail.com (maintainer)
 2018-12-04 17:53:46 +00:00
Yuri Victorovich
8700889032 biology/igv: Update 2.4.15 -> 2.4.16 
Reported by:	portscout
 2018-11-18 20:02:40 +00:00
Yuri Victorovich
1caf88f57e biology/igv: Update 2.4.10 -> 2.4.15 
Port changes:
* Change to gradle, corresponding updates in build, install, environment, etc.

Reported by:	portscout
 2018-11-04 22:55:24 +00:00
Yuri Victorovich
77640f32a7 New port: biology/igv: Visualization tool for genomic datasets 2018-06-25 23:56:00 +00:00