Joseph Mingrone
256883b27f
biology/diamond: Update to version 0.8.26
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Release notes: https://github.com/bbuchfink/diamond/releases/tag/v0.8.26
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8447
2016-11-06 05:42:32 +00:00
Joseph Mingrone
a978a84358
biology/diamond: update to version 0.8.24
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Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8268
2016-10-17 14:17:18 +00:00
Joseph Mingrone
05a0ed9ad2
biology/diamond: update to version 0.8.23
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Upstream release notes:
Added option to change the genetic code used for translation of query in
blastx mode (option --query-gencode, see here for a list of possible values:
https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi ).
Approved by: AMDmi3 (mentor)
Differential Revision: https://reviews.freebsd.org/D8202
2016-10-10 04:33:16 +00:00
Joseph Mingrone
1cbd3576d5
Update email address to jrm@FreeBSD.org for ports that I maintain
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Reviewed by: mat, swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D7995
2016-09-23 21:42:02 +00:00
Dmitry Marakasov
e8c9e4b94d
- Update to 0.8.22
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PR: 212603
Submitted by: jrm@ftfl.ca (maintainer)
2016-09-13 17:50:31 +00:00
Wen Heping
52423ae0c3
- Update to 0.8.20
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PR: 212399
Submitted by: jrm@ftfl.ca(maintainer)
2016-09-06 06:34:59 +00:00
Pawel Pekala
068ecdc2ce
Update to version 0.8.19
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PR: 212145
Submitted by: Joseph Mingrone (maintainer)
2016-08-25 18:49:12 +00:00
Brad Davis
c2ad6e3c47
Update biology/diamond to 0.8.18.
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PR: 211845
Submitted by: Joseph Mingrone <jrm@ftfl.ca> (maintainer)
Approved by: bdrewery (implicit)
2016-08-14 21:47:57 +00:00
Pawel Pekala
301a24b9eb
Update to version 0.8.17
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PR: 211582
Submitted by: Joseph Mingrone (maintainer)
2016-08-05 21:24:06 +00:00
Thomas Zander
fa43feb6ef
Update to upstream release 0.8.16
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PR: 211335
Submitted by: jrm@ftfl.ca (maintainer)
2016-07-24 18:06:21 +00:00
Pawel Pekala
6bb54bdd8b
Trim excess tabs, no-op change
2016-07-14 16:53:06 +00:00
Pawel Pekala
9fc61c1ed0
Update to version 0.8.14
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PR: 211078
Submitted by: Joseph Mingrone (maintainer)
2016-07-14 16:49:41 +00:00
Dmitry Marakasov
a5d57fe539
- Update to 0.8.11
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PR: 210877
Submitted by: jrm@ftfl.ca (maintainer)
2016-07-07 15:46:12 +00:00
Jason Unovitch
ec4e7adcad
biology/diamond: update 0.8.6 -> 0.8.9
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PR: 210710
Submitted by: Joseph Mingrone <jrm@ftfl.ca> (maintainer)
2016-06-30 01:37:22 +00:00
Ruslan Makhmatkhanov
a755587a4e
biology/diamond: update to 0.8.6
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PR: 210345
Submitted by: Joseph Mingrone <jrm@ftfl.ca> (maintainer)
2016-06-17 19:53:46 +00:00
Matthew Seaman
7a2d475f5a
Update to 0.8.5
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PR: 209611
Submitted by: jrm@ftfl.ca (maintainer)
2016-06-09 01:39:58 +00:00
Antoine Brodin
b7431a9678
Fix DEPENDS
2016-05-18 16:22:07 +00:00
Wen Heping
ec07b546cf
DNA query sequences against a protein reference database (BLASTP and BLASTX
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alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
typical sensitivity of 90-99% relative to BLAST depending on the data and
settings.
WWW: http://ab.inf.uni-tuebingen.de/software/diamond/
PR: 208998
Submitted by: jrm@ftfl.ca
2016-05-06 08:45:02 +00:00
