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Commit Graph

28 Commits

Author SHA1 Message Date
Gerald Pfeifer
1cd277bdce Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
2014-03-10 20:55:20 +00:00
David Naylor
e288e58754 Convert Mk/bsd.cran.mk to the Uses framework.
PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
2013-12-28 10:28:40 +00:00
David Naylor
f62456a872 Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).
Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
2013-11-27 18:56:43 +00:00
Brendan Fabeny
1b81841d48 Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
2013-11-13 08:19:34 +00:00
Gerald Pfeifer
3be3e90f93 Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
2013-10-26 00:52:33 +00:00
Baptiste Daroussin
ce5e457020 Add NO_STAGE all over the place in preparation for the staging support (cat: math) 2013-09-20 20:55:04 +00:00
Brendan Fabeny
e80e131996 Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
2013-05-28 15:15:05 +00:00
Brendan Fabeny
51cd110a01 update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
Wen Heping
99af5603ff - Update to 0.16.1 2013-01-15 06:24:08 +00:00
Brendan Fabeny
3f2ca9c1d8 update the R base ports to 2.15.2 and adjust dependent ports
Reviewed by:	thierry, tota, wen
2013-01-04 17:51:39 +00:00
Wen Heping
fcff1e3887 - Update to 0.15-2
- Convert to new Makefile format
2012-10-01 09:46:10 +00:00
Wen Heping
645742aa8d - Update to 0.15.1 2012-07-24 05:06:43 +00:00
Brendan Fabeny
3503a3164f update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
2012-06-26 23:57:00 +00:00
Brendan Fabeny
aa89760550 - update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:	thierry, tota, wen
Approved by:	D. Rue (maintainer) [1], wen [2]
2012-05-04 20:56:15 +00:00
Wen Heping
0d65936ad0 - Update to 0.14.7
Feature safe:	yes
2012-04-09 02:33:03 +00:00
Brendan Fabeny
2dbc7784bc update math/R to 2.14.2, and adjust dependent ports 2012-03-03 16:59:36 +00:00
Brendan Fabeny
6ef707b384 update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
Brendan Fabeny
5d57d97db9 update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:	linimon (portmgr), thierry, tota, wen
Feature safe:	yes
2011-11-27 07:02:15 +00:00
TAKATSU Tomonari
8361e1265d - Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
to Mk/bsd.cran.mk

PR:		ports/162238
Submitted by:	tota (myself)
Approved by:	wen (maintainer of Mk/bsd.cran.mk and many related ports),
		David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
		  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
		Dan Rue <drue_AT_therub_DOT_org>
		  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:	yes
2011-11-15 20:09:02 +00:00
Wen Heping
2a1a0c7760 - Update to 0.14.6 2011-11-09 06:41:15 +00:00
Brendan Fabeny
14e140238c update math/R to 2.13.2, and adjust dependent ports 2011-10-11 14:19:46 +00:00
Wen Heping
0dc8071415 - Update to 0.14.4 2011-08-23 11:42:29 +00:00
Brendan Fabeny
73fa6e1345 update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:		158947 [1]
Submitted by:	wen ([1], independently)
2011-07-28 04:19:58 +00:00
Brendan Fabeny
f08fd58316 - update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:		153309 [1]
Approved by:	thierry (rkward*), wen (rpy*, R-cran-*)
2011-05-07 03:29:59 +00:00
Brendan Fabeny
5022bd5547 Use DISTVERSION for CRAN ports with hyphenated versions
Approved by:	wen
2011-04-30 07:59:12 +00:00
Brendan Fabeny
3d5cca3564 - Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
  where necessary

Approved by:	makc, miwi (mentors, implicit)
2011-02-28 16:03:13 +00:00
Brendan Fabeny
5fe86857c4 - Update R to 2.12.1
- Bump PORTREVISION of
  dependent ports

Approved by:	makc, miwi (mentors, implicit)
		pav (portmgr)
Feature safe:	yes
2011-01-29 16:53:21 +00:00
Wen Heping
57f67727fe R-cran-coda is a R module for output analysis and diagnostics for
Markov Chain Monte Carlo simulations.

WWW: http://cran.case.edu/web/packages/coda/index.html

Feature safe:	yes
2011-01-17 07:57:07 +00:00