Antoine Brodin f0e7a56e4c MFH: r521744 ... Fix build with hdf5 1.10.6		2020-01-01 20:24:02 +00:00
..
2d-rewriter	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
abinit	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
afni	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
agrum	science/agrum: fix build on powerpc64 elfv2	2019-12-22 18:08:07 +00:00
aircraft-datcom
ALPSCore	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
antioch	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
bddsolve	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
berkeleygw
bodr
brian
buddy
cdcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
cdf
cdo	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
cgnslib	Add USES=xorg and USES=gl	2019-11-07 18:41:56 +00:00
cgribex	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
checkmol	- Change LDPATH to FPC_LDPATH into lang/fpc/Makefile. It can be changed from	2019-12-31 15:11:18 +00:00
chemical-mime-data	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
chemps2
chemtool	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
chemtool-devel	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
chrono	Undeprecate math/blaze and science/chrono per https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html	2020-01-01 11:30:49 +00:00
clhep
clipper
code_saturne	Unbreak bulk -a with non default version of python3	2019-11-20 14:47:05 +00:00
colt	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
coordgenlibs	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
coot	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
cp2k	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
cp2k-data
crf++
dalton
datawarrior	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
dcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
devisor	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
dftbplus
dkh
dlib-cpp	Add USES=xorg and USES=gl	2019-11-07 18:41:56 +00:00
dlpoly-classic	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
drawxtl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
dvc
eccodes	Update to 2.15.0	2019-12-30 16:57:07 +00:00
elk
epte
erd
erkale	science/erkale: Update g20190812 -> g20191120	2019-11-23 16:27:52 +00:00
erkale-pseudopotentials
esys-particle	Mark science/esys-particle as BROKEN (not just on 13)	2019-12-30 14:15:34 +00:00
fastcap
fasthenry
fisicalab	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
fleur	science/fleur: Spell HDF5_CMAKE_ON correctly	2019-10-06 08:37:06 +00:00
fsom
fvcom
fvcom-mpi
gabedit	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
gamess-us
gchemutils	Update to 0.10.46 and only keep one libgoffice version	2019-12-16 17:06:38 +00:00
gdma
getdp	- Update to 3.3.0.	2019-12-22 02:28:57 +00:00
ghemical	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
ghmm	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
gnudatalanguage	There is a bug with GraphicsMagick: see	2019-11-23 18:05:22 +00:00
gpaw-setups
gramps	science/gramps: Update to 5.1.1	2019-12-10 13:54:03 +00:00
grib_api
gromacs	science/gromacs: Update 2019.4 -> 2019.5	2019-12-24 07:45:13 +00:00
gsmc	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
gtamsanalyzer
gwyddion	Deprecate a few ports	2019-12-26 07:54:28 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5	Update to 1.10.6	2019-12-30 16:57:12 +00:00
hdf5-18
healpix
highfive	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
hypre
iboview	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
InsightToolkit	- Update devel/gdcm to 3.0.4.	2019-10-19 23:45:10 +00:00
isaac-cfd
jdftx	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
jmol	science/jmol: Update 14.30.0 -> 14.30.1	2019-12-14 07:44:40 +00:00
jstrack	Update to version 3.4.0, which includes updated documentation, links to	2019-10-02 16:14:46 +00:00
kalzium	KDE's December 2019 Apps Update	2019-12-12 23:24:36 +00:00
kim-api
kst2	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
lammps	science/lammps: fix build on GCC architectures	2019-11-28 14:20:18 +00:00
lamprop
latte	devel/openmp: update to 9.0.0	2019-09-21 18:59:57 +00:00
libaec
libccp4
libcint
libctl
libefp
libgeodecomp	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
libghemical	Pet portlint (trailing whitespace).	2019-11-08 03:23:25 +00:00
libgridxc
libint
libint2	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
libkml	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
liblinear
libmsym
liboglappth	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
lm
luscus	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
madness	Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]	2019-12-26 16:25:22 +00:00
maeparser	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
massxpert	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit	Unbreak medit.	2019-11-20 20:40:53 +00:00
meep	Deprecate ports broken for too long	2019-12-10 09:02:42 +00:00
metaphysicl	science/metaphysicl: 0.5.2 -> 0.6.0	2019-10-13 21:17:17 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps	- Change LDPATH to FPC_LDPATH into lang/fpc/Makefile. It can be changed from	2019-12-31 15:11:18 +00:00
molgif	Bump PORTREVISION after r517743 to force relinking.	2019-11-16 12:52:39 +00:00
molscript	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
molsketch
mpb
mpqc	Unmark these ports broken on aarch64.	2019-11-08 03:54:11 +00:00
msms
multiwfn
namd
ncnn	science/ncnn: Update 20191113 -> 20191223	2019-12-24 07:25:08 +00:00
nest	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
netcdf	Update to 4.7.3	2019-12-08 16:52:27 +00:00
netcdf-cxx	Update to 4.3.1	2019-09-12 19:06:48 +00:00
netcdf-fortran	Update to 4.5.2	2019-09-26 18:13:09 +00:00
nifticlib
nwchem	science/nwchem: Update 6.8.1.20190820 -> 7.0.0-beta1	2019-11-23 17:44:06 +00:00
nwchem-data
octopus	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
openbabel
openkim
openkim-models
openmx	Resurrect ports depending on devel/openmp.	2020-01-01 11:46:08 +00:00
opensim-core	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
p5-Geo-WebService-Elevation-USGS	Update to 0.116	2019-10-28 14:57:46 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol	science/packmol: Pack molecules in defined regions of space	2019-09-22 19:06:43 +00:00
pagmo2	Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]	2019-12-26 16:25:22 +00:00
paje
paraview	Unbreak	2019-11-07 17:28:56 +00:00
pcmsolver	science/pcmsolver: fix build on GCC architectures	2019-10-27 19:19:07 +00:00
PETSc	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
pnetcdf
psychopy	Deprecate a few ports	2019-12-26 07:54:28 +00:00
pulseview	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
py-abipy
py-asdf	Update to 2.5.0	2019-12-29 12:55:34 +00:00
py-ase	science/py-ase: Update 3.18.1 -> 3.19.0	2019-12-27 06:46:45 +00:00
py-avogadrolibs
py-cdo
py-chainer	science/py-chainer: Update 6.5.0 -> 7.0.0	2019-12-06 05:52:06 +00:00
py-chainer-chemistry	science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0	2019-12-22 03:10:17 +00:00
py-chempy	science/py-chempy: Update 0.7.8 -> 0.7.9	2019-10-12 15:55:43 +00:00
py-coards
py-DendroPy
py-dlib	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
py-eccodes-python	Update to 0.9.4	2019-12-08 17:03:53 +00:00
py-geomet	Add py-geomet 0.2.1	2019-12-29 12:46:17 +00:00
py-geometer	Update to 0.2.0	2019-09-25 20:41:50 +00:00
py-gpaw
py-GPy	science/py-GPy: Update 1.9.8 -> 1.9.9	2019-10-20 00:41:22 +00:00
py-GPyOpt
py-gsd	science/py-gsd: Update 1.8.1 -> 1.9.3	2019-10-12 16:47:23 +00:00
py-h5py	Update to 2.10.0	2019-09-07 22:44:39 +00:00
py-hcluster	Deprecate a few ports	2019-12-26 07:54:28 +00:00
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
py-mmtf-python
py-molmod	science/py-molmod: Update 1.4.4 -> 1.4.5	2019-10-12 16:44:38 +00:00
py-netCDF4
py-obspy
py-oddt	science/py-oddt: Update 0.6 -> 0.7	2019-12-27 05:12:21 +00:00
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py	Resurrect ports depending on devel/openmp.	2020-01-01 11:46:08 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pydicom
py-PyFR	Resurrect ports depending on devel/openmp.	2020-01-01 11:46:08 +00:00
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante	Unmark these ports broken on aarch64.	2019-11-08 03:54:11 +00:00
py-pysal
py-pyteomics
py-pyteomics.biolccc	Deprecate a few ports	2019-12-26 07:54:28 +00:00
py-qcelemental	science/py-qcelemental: Update 0.9.0 -> 0.11.0	2019-10-29 03:42:56 +00:00
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-ScientificPython	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
py-scikit-fuzzy	science/py-scikit-fuzzy: Update 0.4.1 -> 0.4.2	2019-11-16 09:42:27 +00:00
py-scikit-learn	- Update to 0.22	2019-12-17 13:09:33 +00:00
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-tensorflow	Unbreak bulk -a with non default versions of python3	2019-11-20 14:42:36 +00:00
py-tensorflow-estimator	Mark BROKEN: fails to build	2019-11-20 14:00:42 +00:00
py-veusz	science/py-veusz: Update 3.0.1 -> 3.1	2019-10-29 03:36:12 +00:00
py-ws2300
pybrain
pycdf	Deprecate a few ports	2019-12-26 07:54:28 +00:00
pynn
qbox	science/qbox: Update 1.67.4 -> 1.68.0	2019-09-21 06:35:02 +00:00
qcl
qmcpack	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
quantum-espresso	science/quantum-espresso: Update 6.4.1 -> 6.5	2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm	- Update to 3.1.4	2019-11-29 23:26:04 +00:00
R-cran-cmprsk	- Update to 2.2-9	2019-10-11 09:12:52 +00:00
R-cran-DCluster
R-cran-e1071	- Update to 1.7-3	2019-11-28 14:43:13 +00:00
R-cran-eco
R-cran-Epi	- Update to 2.40	2019-11-28 00:12:45 +00:00
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab	- Update to 0.9-29	2019-11-14 22:29:41 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
rmf	MFH: r521744	2020-01-01 20:24:02 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson	Cosmetic change	2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
scidavis	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw	science/sigrok-firmware-fx2lafw: Update to version 0.1.7	2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
silo
simbody	science/simbody: Update 3.6.1 -> 3.7	2019-12-09 16:20:00 +00:00
simgrid	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
simint
simlib
simsmith	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
smoldyn	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
sparta	science/sparta: Update 16Apr2019 -> 9Sep2019	2019-09-10 03:18:50 +00:00
spglib
step	KDE's December 2019 Apps Update	2019-12-12 23:24:36 +00:00
svmlight
szip
teem
tfel	science/tfel: update to version 3.3	2019-12-21 19:53:14 +00:00
tinker	science/tinker: Update 8.7.1 -> 8.7.2	2019-11-29 07:44:51 +00:00
udunits
v_sim	Make fetchable again.	2019-11-19 21:38:47 +00:00
vipster	Mark a few ports BROKEN (unfetchable)	2019-11-06 16:26:34 +00:00
vmd	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
voro++
wannier90
wwplot
wxmacmolplt
xcrysden	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
xdrawchem
xfce4-equake-plugin	science/xfce4-equake-plugin: fix build on GCC architectures	2019-10-02 14:02:33 +00:00
yoda
Makefile	Resurrect ports depending on devel/openmp.	2020-01-01 11:46:08 +00:00