mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-25 00:51:21 +00:00
39 lines
1.3 KiB
Makefile
39 lines
1.3 KiB
Makefile
|
|
PORTNAME= ncbi-cxx-toolkit
|
|
DISTVERSION= 22_0_0
|
|
CATEGORIES= biology science devel
|
|
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/
|
|
DISTNAME= ncbi_cxx--${DISTVERSION}
|
|
|
|
MAINTAINER= yuri@FreeBSD.org
|
|
COMMENT= NCBI C++ Toolkit
|
|
|
|
LICENSE= PD
|
|
LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
|
|
|
|
LIB_DEPENDS= liblmdb.so:databases/lmdb \
|
|
libpcre.so:devel/pcre
|
|
RUN_DEPENDS= bash:shells/bash
|
|
|
|
USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg
|
|
SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py
|
|
USE_XORG= x11 xpm
|
|
|
|
GNU_CONFIGURE= yes
|
|
CONFIGURE_ARGS= --without-debug --with-dll --without-static
|
|
|
|
post-install:
|
|
# strip
|
|
@${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD}
|
|
@${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD}
|
|
# remove an empty directory
|
|
@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
|
|
# remove the conflicting file
|
|
@${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so
|
|
# autoplist: thousands of files
|
|
@cd ${STAGEDIR}${PREFIX} && \
|
|
${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \
|
|
${FIND} * -type f -or -type l >> ${TMPPLIST}
|
|
|
|
.include <bsd.port.mk>
|