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The Subread package comprises a suite of software programs for processing
next-gen sequencing read data including:
Subread: a general-purpose read aligner
Subjunc: a read aligner developed for aligning RNA-seq reads
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: discovers SNPs by testing signals against local background noise.
17 lines
253 B
Plaintext
17 lines
253 B
Plaintext
bin/detectionCall
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bin/exactSNP
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bin/featureCounts
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bin/flattenGTF
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bin/genRandomReads
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bin/propmapped
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bin/qualityScores
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bin/removeDup
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bin/repair
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bin/subindel
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bin/subjunc
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bin/sublong
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bin/subread-align
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bin/subread-buildindex
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bin/subread-fullscan
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bin/txUnique
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