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freebsd-ports/science/py-gemmi/files/patch-CMakeLists.txt
Yuri Victorovich 122e253d6b science/{,py-}gemmi: update 0.6.6 → 0.6.7 
Reported by:	portscout
2024-09-06 23:24:52 -07:00

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--- CMakeLists.txt.orig 2024-09-06 14:24:17 UTC
+++ CMakeLists.txt
@@ -6,7 +6,7 @@ string(REGEX REPLACE ".+\"([0-9]+\.[0-9]+\.[0-9]+)(-de
string(REGEX REPLACE ".+\"([0-9]+\.[0-9]+\.[0-9]+)(-dev)?\"" "\\1"
gemmi_version_str ${gemmi_version_line})
-project(gemmi LANGUAGES C CXX VERSION ${gemmi_version_str})
+project(gemmi_python LANGUAGES C CXX VERSION ${gemmi_version_str})
message(STATUS "Gemmi version ${PROJECT_VERSION}")
include(GNUInstallDirs) # for CMAKE_INSTALL_LIBDIR, etc
@@ -18,6 +18,8 @@ endif()
#set(CMAKE_INSTALL_BINDIR "${SKBUILD_SCRIPTS_DIR}")
endif()
+find_package(gemmi REQUIRED)
+
option(BUILD_SHARED_LIBS "Build shared library" ON)
option(BUILD_GEMMI_PROGRAM "Build gemmi command-line program" ON)
option(INSTALL_DEV_FILES "Install C++ headers, cmake configs, static lib" ON)
@@ -200,71 +202,9 @@ endif()
# target_link_libraries(fgemmi PRIVATE cgemmi)
#endif()
-add_library(gemmi_headers INTERFACE)
-add_library(gemmi::headers ALIAS gemmi_headers)
-target_include_directories(gemmi_headers INTERFACE
- "$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>"
- "$<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>")
-target_compile_features(gemmi_headers INTERFACE cxx_std_11)
-set_target_properties(gemmi_headers PROPERTIES EXPORT_NAME headers)
-
-add_library(gemmi_cpp
- src/align.cpp src/assembly.cpp src/calculate.cpp src/crd.cpp
- src/ddl.cpp src/eig3.cpp src/gz.cpp src/intensit.cpp src/json.cpp
- src/mmcif.cpp src/mmread_gz.cpp src/mtz.cpp src/mtz2cif.cpp
- src/pdb.cpp src/polyheur.cpp src/read_cif.cpp src/read_map.cpp
- src/resinfo.cpp src/riding_h.cpp src/sprintf.cpp src/to_mmcif.cpp
- src/to_pdb.cpp src/monlib.cpp src/topo.cpp src/xds_ascii.cpp)
-add_library(gemmi::gemmi_cpp ALIAS gemmi_cpp)
-set_property(TARGET gemmi_cpp PROPERTY POSITION_INDEPENDENT_CODE ON)
-#set_property(TARGET gemmi_cpp PROPERTY CXX_VISIBILITY_PRESET hidden)
-target_compile_definitions(gemmi_cpp PRIVATE GEMMI_BUILD)
-target_include_directories(gemmi_cpp PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/third_party")
-
-if (BUILD_SHARED_LIBS)
- target_compile_definitions(gemmi_cpp PUBLIC GEMMI_SHARED)
- if (ADD_SOVERSION)
- set_target_properties(gemmi_cpp PROPERTIES VERSION ${PROJECT_VERSION}
- SOVERSION "0")
- endif()
-endif()
-target_link_libraries(gemmi_cpp PUBLIC gemmi_headers)
-
-if (FETCH_ZLIB_NG)
- target_compile_definitions(gemmi_cpp PRIVATE USE_ZLIB_NG=1)
- target_link_libraries(gemmi_cpp PRIVATE zlib)
-elseif (ZLIB_NG_FOUND)
- target_compile_definitions(gemmi_cpp PRIVATE USE_ZLIB_NG=1)
- target_link_libraries(gemmi_cpp PRIVATE ZLIB_NG::ZLIB_NG)
-elseif (ZLIB_FOUND)
- target_link_libraries(gemmi_cpp PRIVATE ZLIB::ZLIB)
-else()
- target_sources(gemmi_cpp PRIVATE
- "third_party/zlib/adler32.c"
- "third_party/zlib/crc32.c"
- "third_party/zlib/gzlib.c"
- "third_party/zlib/gzread.c"
- "third_party/zlib/inflate.c"
- "third_party/zlib/inftrees.c"
- "third_party/zlib/inffast.c"
- "third_party/zlib/zutil.c")
- check_include_file(unistd.h has_unistd_h)
- target_compile_definitions(gemmi_cpp PRIVATE NO_GZCOMPRESS=1 DYNAMIC_CRC_TABLE=1)
- if (has_unistd_h)
- target_compile_definitions(gemmi_cpp PRIVATE Z_HAVE_UNISTD_H=1)
- endif()
- target_include_directories(gemmi_cpp PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/third_party/zlib")
- if (CMAKE_CXX_COMPILER_ID MATCHES "MSVC")
- # /wd4267 - conversion from 'size_t' to 'unsigned int', possible loss of data
- target_compile_options(gemmi_cpp PRIVATE /wd4267)
- endif()
-endif()
-
-
### programs from prog/ ###
add_library(options OBJECT prog/options.cpp)
-target_link_libraries(options PUBLIC gemmi_headers)
target_include_directories(options PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/third_party")
if (GEMMI_VERSION_INFO)
target_compile_definitions(options PRIVATE GEMMI_VERSION_INFO=${GEMMI_VERSION_INFO})
@@ -276,11 +216,11 @@ function(add_single_prog target)
cmake_parse_arguments(arg "NOLIB" "ADD_SRC" "" ${ARGN})
add_executable(gemmi-${target} EXCLUDE_FROM_ALL prog/${target}.cpp ${arg_ADD_SRC}
$<TARGET_OBJECTS:options>)
- if (arg_NOLIB)
- target_link_libraries(gemmi-${target} PRIVATE gemmi_headers)
- else()
- target_link_libraries(gemmi-${target} PRIVATE gemmi_cpp)
- endif()
+ #if (arg_NOLIB)
+ # target_link_libraries(gemmi-${target} PRIVATE gemmi_headers)
+ #else()
+ # target_link_libraries(gemmi-${target} PRIVATE gemmi)
+ #endif()
target_include_directories(gemmi-${target} PRIVATE
"${CMAKE_CURRENT_SOURCE_DIR}/third_party")
endfunction()
@@ -334,7 +274,7 @@ add_executable(gemmi::prog ALIAS gemmi_prog)
prog/xds2mtz.cpp
$<TARGET_OBJECTS:options>)
add_executable(gemmi::prog ALIAS gemmi_prog)
-target_link_libraries(gemmi_prog PRIVATE gemmi_cpp)
+target_link_libraries(gemmi_prog PRIVATE gemmi::gemmi_cpp)
target_include_directories(gemmi_prog PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/third_party")
target_compile_definitions(gemmi_prog PRIVATE GEMMI_ALL_IN_ONE=1)
set_target_properties(gemmi_prog PROPERTIES OUTPUT_NAME gemmi EXPORT_NAME prog)
@@ -386,9 +326,9 @@ add_executable(doc_maybegz EXCLUDE_FROM_ALL docs/code/
add_executable(doc_example2 EXCLUDE_FROM_ALL docs/code/cif_cc.cpp)
target_link_libraries(doc_example2 PRIVATE gemmi_headers)
add_executable(doc_maybegz EXCLUDE_FROM_ALL docs/code/maybegz.cpp docs/code/mutate.cpp)
-target_link_libraries(doc_maybegz PRIVATE gemmi_cpp)
+target_link_libraries(doc_maybegz PRIVATE gemmi)
add_executable(doc_newmtz EXCLUDE_FROM_ALL docs/code/newmtz.cpp)
-target_link_libraries(doc_newmtz PRIVATE gemmi_cpp)
+target_link_libraries(doc_newmtz PRIVATE gemmi)
# always compile these tests with assertions enabled
if (CMAKE_CXX_COMPILER_ID MATCHES "Clang|GNU|Intel")
@@ -396,14 +336,14 @@ add_executable(test_disulf EXCLUDE_FROM_ALL tests/disu
endif()
add_executable(test_disulf EXCLUDE_FROM_ALL tests/disulf.cpp)
-target_link_libraries(test_disulf PRIVATE gemmi_cpp)
+target_link_libraries(test_disulf PRIVATE gemmi)
# auth_label requires <experimental/filesystem> and -lstdc++fs
add_executable(auth_label EXCLUDE_FROM_ALL examples/auth_label.cpp)
-target_link_libraries(auth_label PRIVATE gemmi_cpp)
+target_link_libraries(auth_label PRIVATE gemmi)
add_executable(check_conn EXCLUDE_FROM_ALL examples/check_conn.cpp)
-target_link_libraries(check_conn PRIVATE gemmi_cpp)
+target_link_libraries(check_conn PRIVATE gemmi)
enable_testing()
@@ -440,7 +380,7 @@ if (benchmark_FOUND)
foreach(b stoi elem mod niggli pdb resinfo round sym writecif)
add_executable(${b}-bm EXCLUDE_FROM_ALL benchmarks/${b}.cpp)
if (b MATCHES "resinfo|pdb|writecif")
- target_link_libraries(${b}-bm PRIVATE gemmi_cpp)
+ target_link_libraries(${b}-bm PRIVATE gemmi)
endif()
target_link_libraries(${b}-bm PRIVATE gemmi_headers benchmark::benchmark)
set_property(TARGET ${b}-bm PROPERTY RUNTIME_OUTPUT_DIRECTORY
@@ -482,11 +422,11 @@ if (USE_PYTHON)
python/sf.cpp python/sym.cpp python/topo.cpp
python/unitcell.cpp python/write.cpp)
if (STANDALONE_PYTHON_MODULE)
- target_sources(gemmi_py PRIVATE $<TARGET_OBJECTS:gemmi_cpp>)
- get_target_property(_gemmi_cpp_libs gemmi_cpp LINK_LIBRARIES)
+ target_sources(gemmi_py PRIVATE gemmi::gemmi_cpp)
+ get_target_property(_gemmi_cpp_libs gemmi::gemmi_cpp LINK_LIBRARIES)
set_property(TARGET gemmi_py APPEND PROPERTY LINK_LIBRARIES ${_gemmi_cpp_libs})
else()
- target_link_libraries(gemmi_py PRIVATE gemmi_cpp)
+ target_link_libraries(gemmi_py PRIVATE gemmi::gemmi_cpp)
endif()
set_property(TARGET gemmi_py PROPERTY OUTPUT_NAME gemmi)
if(CMAKE_CXX_FLAGS MATCHES "-Wshadow")
@@ -541,19 +481,19 @@ endif()
install(TARGETS gemmi_prog EXPORT GemmiTargets)
endif()
-if (INSTALL_DEV_FILES)
+#if (INSTALL_DEV_FILES)
# In CMake 3.23 we'll be able to use FILE_SET to install the headers
- install(DIRECTORY include/gemmi DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}")
- install(TARGETS gemmi_headers gemmi_cpp EXPORT GemmiTargets)
- install(EXPORT GemmiTargets FILE gemmi-targets.cmake NAMESPACE gemmi::
- DESTINATION "${GEMMI_INSTALL_CMAKEDIR}")
- install(FILES
- "${CMAKE_CURRENT_BINARY_DIR}/gemmi-config.cmake"
- "${CMAKE_CURRENT_BINARY_DIR}/gemmi-config-version.cmake"
- DESTINATION "${GEMMI_INSTALL_CMAKEDIR}")
-elseif (BUILD_SHARED_LIBS AND BUILD_GEMMI_PROGRAM)
- install(TARGETS gemmi_cpp)
-endif()
+ #install(DIRECTORY include/gemmi DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}")
+ #install(TARGETS gemmi_headers gemmi_cpp EXPORT GemmiTargets)
+ #install(EXPORT GemmiTargets FILE gemmi-targets.cmake NAMESPACE gemmi::
+ # DESTINATION "${GEMMI_INSTALL_CMAKEDIR}")
+ #install(FILES
+ # "${CMAKE_CURRENT_BINARY_DIR}/gemmi-config.cmake"
+ # "${CMAKE_CURRENT_BINARY_DIR}/gemmi-config-version.cmake"
+ # DESTINATION "${GEMMI_INSTALL_CMAKEDIR}")
+#elseif (BUILD_SHARED_LIBS AND BUILD_GEMMI_PROGRAM)
+# install(TARGETS gemmi_cpp)
+#endif()
if (USE_PYTHON)
if (DEFINED PYTHON_INSTALL_DIR)
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