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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-25 04:43:33 +00:00
freebsd-ports/biology
Antoine Brodin e33aca5e9c Mark BROKEN: Checksum and size mismatch
Reported by:	pkg-fallout
2015-01-31 09:49:22 +00:00
..
ariadne misc/otter & biology/ariadne: Not jobs safe 2015-01-21 18:39:11 +00:00
artemis Cleanup plist 2014-10-20 07:10:48 +00:00
avida Cleanup plist 2014-12-20 17:27:08 +00:00
babel
biococoa Cleanup plist 2014-10-20 07:10:48 +00:00
biojava
blat Update to upstream version 36 2015-01-01 18:17:53 +00:00
chemeq
clustalw
consed
crux Cleanup plist 2014-10-20 07:10:48 +00:00
emboss Bump portrevision after png update 2014-12-25 20:54:41 +00:00
fasta
fasta3 Cleanup plist 2014-10-20 07:10:48 +00:00
fastdnaml Cleanup plist 2014-10-20 07:10:48 +00:00
fluctuate
garlic Cleanup plist 2014-10-20 07:10:48 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer Cleanup plist 2014-10-20 07:10:48 +00:00
htslib HTSlib is an implementation of a unified C library for accessing common file 2014-12-14 22:35:07 +00:00
iolib - Update to 1.13.9 2015-01-30 21:49:29 +00:00
jalview Cleanup plist 2014-10-20 07:10:48 +00:00
lagan
lamarc
libsbml - Convert USE_PYTHON -> USES leftovers missed in the previous commits 2015-01-04 08:23:23 +00:00
linux-foldingathome Cleanup plist 2014-12-20 17:27:08 +00:00
mafft Cleanup plist 2014-10-20 07:10:48 +00:00
mapm3
migrate - Update to 3.6.6 2015-01-31 06:35:24 +00:00
molden
mopac - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
mrbayes
mummer Cleanup plist 2014-10-20 07:10:48 +00:00
muscle
ncbi-blast+ Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package is 2014-12-31 00:31:55 +00:00
ncbi-toolkit Cleanup plist 2014-10-20 07:10:48 +00:00
njplot
ortep3
p5-AcePerl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-ASN1-EntrezGene Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das-Lite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-GFF3 Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Glite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Graphics - Update to 2.39 2014-12-07 07:44:06 +00:00
p5-Bio-MAGETAB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-NEXUS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Phylo - Update to 0.58 2014-12-07 04:41:47 +00:00
p5-Bio-SCF Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl-run - Simplify Makefile 2015-01-18 22:49:09 +00:00
paml - Pass maintainership to submitter 2015-01-19 12:11:25 +00:00
phrap - Fix various distinfo errors 2014-10-16 08:55:30 +00:00
phred
phylip - Update to version 3.696 2014-11-02 14:13:59 +00:00
phyml Convert to USES=autoreconf 2014-12-28 19:14:13 +00:00
platon Mark BROKEN: Unfetchable 2015-01-10 09:41:07 +00:00
plink
plinkseq - Update to 0.10 2014-10-12 03:16:10 +00:00
povchem Cleanup plist 2014-12-20 17:27:08 +00:00
primer3
protomol Bump portrevision after png update 2014-12-25 20:54:41 +00:00
psi88
py-biopython biology/py-biopython: 2015-01-19 20:21:12 +00:00
pycogent - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
pyfasta - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
python-nexus - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
recombine
ruby-bio Cleanup plist 2014-10-20 07:10:48 +00:00
samtools Samtools implements various utilities for post-processing alignments in the 2014-12-15 21:59:19 +00:00
seaview Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
seqan Cleanup plist 2014-10-20 07:10:48 +00:00
seqio
seqtools biology/seqtools: 4.30 -> 4.31 2014-12-13 18:10:31 +00:00
sim4
ssaha Cleanup plist 2014-12-20 17:27:08 +00:00
t_coffee
tinker Mark BROKEN: Checksum and size mismatch 2015-01-31 09:49:22 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene Update to version 1.15.1. 2015-01-06 05:28:58 +00:00
velvet Designatate 4 ports as unsafe for parallel building 2015-01-19 17:43:57 +00:00
wise Cleanup plist 2014-12-20 17:27:08 +00:00
xmolwt
Makefile Remove expired ports: 2015-01-01 01:13:11 +00:00