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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-13 03:03:15 +00:00
freebsd-ports/science
Gerald Pfeifer 3e11ad87e7 Update the comment explaining the use of USE_GCC=yes to current
realitiy (gfortran48 has not been the default for a while), and
in fact general enough for a soon-to-come update of lang/gcc.
2017-05-14 20:18:04 +00:00
..
2d-rewriter
afni Fix shebangs 2017-05-04 05:26:01 +00:00
avogadro - Fix build with gcc5 2017-05-06 15:17:38 +00:00
bddsolve devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
bft
bodr - Add LICENSE 2017-05-02 09:00:11 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
cdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
cdo Update to 1.8.1 2017-04-13 19:32:03 +00:00
cgnslib Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
cgribex Add GRIB_API option 2017-02-12 08:20:20 +00:00
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep Mark some ports failing on power64. In cases where the error message 2017-05-13 23:36:16 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++
dcl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
devisor
dlpoly-classic Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ecs
epte
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
fvcom Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
fvcom-mpi
fvm Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
gchemutils Update gchemutils to 0.14.16. 2016-12-31 19:43:21 +00:00
getdp Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
ghemical Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ghmm
gnudatalanguage Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
gramps science/gramps: Update to 4.2.5 2016-12-19 12:52:40 +00:00
grib_api Update to 1.21.0 2017-04-02 02:37:25 +00:00
gromacs devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer
gwyddion - localbaes 2017-04-21 10:58:05 +00:00
h5utils
harminv Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
hdf5 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hdf5-18 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hs-bio
iboview Consolidate the Mesa ports, update to 17.0.4, and add Wayland option 2017-05-12 18:46:53 +00:00
InsightToolkit science/InsightToolkit: Fix build with clang 4.0 2017-04-15 03:01:23 +00:00
isaac-cfd Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Chase ffmpeg 3.3 update (ABI changes) 2017-04-25 08:20:30 +00:00
kst2 Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
lamprop
libaec Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
libctl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libgeodecomp devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
libghemical Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libint Update the comment explaining the use of USE_GCC=yes to current 2017-05-14 20:18:04 +00:00
libkml devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
liblinear
liboglappth
libquantum
libsvm - Sort out options (for instance, OPTIMIZED_CFLAGS does not belong to python slave port) 2017-04-12 09:56:35 +00:00
libsvm-python
libxc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
linsmith
massxpert Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mbdyn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit
meep Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mei
metaf2xml The correct way to check for Perl's version is with PERL_LEVEL. 2016-10-27 17:21:09 +00:00
minc2
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
mpb Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mpqc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mpqc-mpich
ncs Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
netcdf Add LICENSE 2017-04-17 16:05:56 +00:00
netcdf-cxx
netcdf-fortran Add LICENSE 2017-04-17 16:06:01 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel Provide more descriptive error messages for ports failing on powerpc64. 2017-04-30 04:35:10 +00:00
openkim Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
orthanc devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-dicomweb devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-postgresql devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-webviewer devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements - Update to 1.071 2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol
p5-Physics-Unit Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
paje
paraview - Update to 5.2.0 2017-01-10 10:59:01 +00:00
pnetcdf Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
psychopy Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
pulseview devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
py-cdo Update to 1.3.3 2017-02-25 09:55:24 +00:00
py-coards
py-DendroPy Update to 4.2.0 2017-03-29 21:16:07 +00:00
py-h5py - Remove bogus NO_ARCH: this module installs .so files 2016-11-24 14:57:16 +00:00
py-hcluster
py-mdp
py-mlpy Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
py-netCDF4 science/py-netCDF4: Update version 1.2.4=>1.2.7 2017-02-25 19:07:33 +00:00
py-obspy Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-paida
py-pupynere
py-pyaixi
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal - Update to 1.13.0 2016-12-12 20:58:04 +00:00
py-pyteomics Update to 3.4.1. 2017-02-22 01:45:24 +00:00
py-pyteomics.biolccc
py-scikit-fuzzy
py-scikit-learn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scikit-sparse Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scimath
py-scipy - Fix build with gcc5 2017-05-05 14:42:02 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain
pycdf In several dozen ports, use single space for WWW: line in pkg-descr, and 2016-11-22 14:04:21 +00:00
pynn - Update to 0.8.2 2016-12-28 08:01:30 +00:00
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 - Update to 1.6-8 2017-05-07 07:46:15 +00:00
R-cran-eco
R-cran-Epi - Update to 2.12 2017-05-07 07:39:46 +00:00
R-cran-epicalc
R-cran-etm
R-cran-snow
R-cran-som
rubygem-ai4r
rubygem-cdo Update to 1.3.3 2017-02-25 09:55:29 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils
silo Update my email address 2017-05-08 17:21:49 +00:00
simlib Fix some misspellings that crept in on the last tier-2 cleanup pass. 2016-11-16 09:29:15 +00:00
simsmith
step Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
tfel Cleanup. 2017-05-04 20:30:48 +00:00
udunits Update to 2.2.24 2017-01-25 16:31:27 +00:00
v_sim Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
veusz Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDS 2017-02-04 13:37:15 +00:00
vmd science/vmd: unbreak build 2017-04-04 05:19:52 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol
Makefile science/iboview: new port. iboview is an advanced program for analyzing molecular electronic structure. 2017-05-02 02:46:41 +00:00