mirror of
https://git.FreeBSD.org/ports.git
synced 2025-01-26 09:46:09 +00:00
56 lines
1.5 KiB
Makefile
56 lines
1.5 KiB
Makefile
# New ports collection makefile for: lagan
|
|
# Date created: 07 Dec 2005
|
|
# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
|
|
#
|
|
# $FreeBSD$
|
|
#
|
|
|
|
PORTNAME= lagan
|
|
PORTVERSION= 1.2
|
|
CATEGORIES= biology
|
|
MASTER_SITES= http://lagan.stanford.edu/lagan_web/
|
|
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//}
|
|
|
|
MAINTAINER= fernan@iib.unsam.edu.ar
|
|
COMMENT= Efficient tools for large-scale multiple alignments of genomic DNA
|
|
|
|
LAGAN_DIR= ${PREFIX}/${PORTNAME}
|
|
USE_PERL5_RUN= yes
|
|
SUB_FILES= pkg-message
|
|
SUB_LIST= LAGAN_DIR=${LAGAN_DIR}
|
|
|
|
EXECUTABLES= anchors chaos glocal mlagan order
|
|
SCRIPTS= anal_gloc.pl lagan.pl rechaos.pl slagan.pl
|
|
EXEUTILS= Glue bin2bl bin2mf cextract contigorder cstat dotplot fa2xfa \
|
|
getbounds getcontigpos getlength getoverlap rc scorealign \
|
|
scorecontigs seqmerge
|
|
SCRIPTUTILS= cmerge2.pl draft.pl mextract.pl mf2bin.pl mpretty.pl \
|
|
mproject.pl mrun.pl mrunfile.pl mrunpairs.pl mviz.pl
|
|
|
|
CC:= ${CC} ${CFLAGS}
|
|
MAKE_ENV+= CPP="${CXX} ${CXXFLAGS}"
|
|
|
|
post-patch:
|
|
@${REINPLACE_CMD} -E 's,^(CC|CPP) =,\1 ?=,g' \
|
|
${WRKSRC}/Makefile
|
|
|
|
do-install:
|
|
@${MKDIR} ${LAGAN_DIR}
|
|
${CP} -R ${WRKSRC}/Readmes ${LAGAN_DIR}
|
|
.for exe in ${EXECUTABLES}
|
|
${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${LAGAN_DIR}
|
|
.endfor
|
|
.for script in ${SCRIPTS}
|
|
${INSTALL_SCRIPT} ${WRKSRC}/${script} ${LAGAN_DIR}
|
|
.endfor
|
|
@${MKDIR} ${LAGAN_DIR}/utils
|
|
.for exeutil in ${EXEUTILS}
|
|
${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${LAGAN_DIR}/utils
|
|
.endfor
|
|
.for scriptutil in ${SCRIPTUTILS}
|
|
${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${LAGAN_DIR}/utils
|
|
.endfor
|
|
@${CAT} ${PKGMESSAGE}
|
|
|
|
.include <bsd.port.mk>
|