mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-25 04:43:33 +00:00
54 lines
1.6 KiB
Makefile
54 lines
1.6 KiB
Makefile
PORTNAME= bolt-lmm
|
|
DISTVERSION= 2.3.4
|
|
PORTREVISION= 4
|
|
CATEGORIES= biology
|
|
MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
|
|
DISTNAME= BOLT-LMM_v${PORTVERSION}
|
|
|
|
MAINTAINER= jwb@FreeBSD.org
|
|
COMMENT= Mixed model association testing and variance component analysis
|
|
|
|
LICENSE= GPLv3
|
|
LICENSE_FILE= ${WRKSRC}/license.txt
|
|
|
|
LIB_DEPENDS= libnlopt.so:math/nlopt \
|
|
libopenblas.so:math/openblas \
|
|
libboost_program_options.so:devel/boost-libs
|
|
|
|
# gcc-c++11-lib needed to link with boost. Also requires compiler:openmp, but
|
|
# both merely add a GCC requirement.
|
|
USES= compiler:gcc-c++11-lib gmake
|
|
|
|
BUILD_WRKSRC= ${WRKDIR}/${DISTNAME}/src
|
|
INSTALL_WRKSRC= ${WRKDIR}/${DISTNAME}/src
|
|
CXXFLAGS_i386= -DUSE_SSE -msse -msse2
|
|
CXXFLAGS_amd64= -DUSE_SSE
|
|
CXXFLAGS_powerpc64= -DNO_WARN_X86_INTRINSICS -mvsx
|
|
CXXFLAGS_powerpc64le= -DNO_WARN_X86_INTRINSICS -mvsx
|
|
MAKE_ARGS= BOOST_INSTALL_DIR=${LOCALBASE} \
|
|
NLOPT_INSTALL_DIR=${LOCALBASE} \
|
|
ZLIB_STATIC_DIR=/usr/lib \
|
|
LIBSTDCXX_STATIC_DIR=/usr/lib \
|
|
GLIBC_STATIC_DIR=/usr/lib \
|
|
SSEFLAGS="" \
|
|
MEMCPY="" \
|
|
LLAPACK="-lopenblas -lgfortran"
|
|
|
|
PORTEXAMPLES= *
|
|
|
|
OPTIONS_DEFINE= EXAMPLES
|
|
|
|
pre-configure:
|
|
@${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt
|
|
@${REINPLACE_CMD} -e 's|tables/|${DATADIR}/tables/|g' \
|
|
${BUILD_WRKSRC}/BoltParams.cpp
|
|
@${REINPLACE_CMD} -e 's|../tables/|${DATADIR}/tables/|g' \
|
|
${WRKSRC}/example/run_example.sh
|
|
|
|
do-install:
|
|
${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/bolt ${STAGEDIR}${PREFIX}/bin
|
|
(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
|
|
(cd ${WRKSRC} && ${COPYTREE_SHARE} tables ${STAGEDIR}${DATADIR})
|
|
|
|
.include <bsd.port.mk>
|