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freebsd-ports/biology/phrap/files/patch-cand_pairs.c
Kurt Jaeger 690da7ea38 update ports:
biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
2014-08-23 18:04:58 +00:00

19 lines
580 B
C

--- ./cand_pairs.c.orig 2008-08-31 03:02:56.000000000 +0200
+++ ./cand_pairs.c 2014-08-02 12:39:30.000000000 +0200
@@ -38,6 +38,7 @@
static int num_cand_pairs, num_dups, num_repeat_rejected_pairs;
+void
cluster_pairs(entry1, entry2, start1, start2, reverse, rev_store_flag)
int entry1, entry2, start1, start2;
int reverse, rev_store_flag;
@@ -74,6 +75,7 @@
set_equiv_class(entry, final_class);
}
+void
make_new_cand_pair(entry1, entry2, start1, start2, reverse, rev_store_flag)
int entry1, entry2, start1, start2;
int reverse, rev_store_flag;