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freebsd-ports/science
History
Pedro F. Giffuni 773733555c science/tfel: completely disable the PYTHON option. 
It is causing too much pkg-fallout so leave it for further investigation.

Approved by:	thierry (mentor)
2019-12-01 15:56:04 +00:00
..
2d-rewriter
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
abinit
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
afni
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
agrum
science/agrum: Update 0.15.2 -> 0.16.3
2019-10-31 05:46:54 +00:00
aircraft-datcom
…
ALPSCore
…
antioch
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
apbs
…
atom
…
atompaw
…
avogadro2
…
avogadrolibs
…
bagel
…
bddsolve
…
berkeleygw
…
bodr
…
brian
…
buddy
…
cdcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
cdf
- Switch to new test framework (note that test currently segfaults)
2019-08-28 09:02:41 +00:00
cdo
Update to 1.9.8
2019-11-13 23:25:29 +00:00
cgnslib
Add USES=xorg and USES=gl
2019-11-07 18:41:56 +00:00
cgribex
science/cgribex: Spell SZIP_CONFIGURE_OFF correctly
2019-10-20 08:46:09 +00:00
checkmol
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
chemical-mime-data
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
chemps2
…
chemtool
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chemtool-devel
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chrono
devel/openmp: update to 9.0.0
2019-09-21 18:59:57 +00:00
clhep
…
clipper
…
code_saturne
Unbreak bulk -a with non default version of python3
2019-11-20 14:47:05 +00:00
colt
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
coordgenlibs
…
coot
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
cp2k
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
cp2k-data
…
crf++
…
dalton
…
datawarrior
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
devisor
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
dftbplus
…
dkh
…
dlib-cpp
Add USES=xorg and USES=gl
2019-11-07 18:41:56 +00:00
dlpoly-classic
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
drawxtl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
dvc
…
eccodes
Update to 2.14.1
2019-11-04 15:58:47 +00:00
elk
…
epte
…
erd
…
erkale
science/erkale: Update g20190812 -> g20191120
2019-11-23 16:27:52 +00:00
erkale-pseudopotentials
…
esys-particle
…
fastcap
…
fasthenry
…
fisicalab
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
fleur
science/fleur: Spell HDF5_CMAKE_ON correctly
2019-10-06 08:37:06 +00:00
fsom
…
fvcom
Bump PORTREVISION for science/netcdf-fortran shlib change
2019-08-31 17:11:57 +00:00
fvcom-mpi
Bump PORTREVISION for science/netcdf-fortran shlib change
2019-08-31 17:11:57 +00:00
gabedit
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
gamess-us
…
gchemutils
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
gdma
…
getdp
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
ghemical
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
ghmm
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gnudatalanguage
There is a bug with GraphicsMagick: see
2019-11-23 18:05:22 +00:00
gpaw-setups
…
gramps
…
grib_api
Mark CONFLICTS_INSTALL between science/eccodes and science/grib_api
2019-08-31 11:21:16 +00:00
gromacs
science/gromacs: Update 2019.3 -> 2019.4
2019-10-05 22:57:39 +00:00
gsmc
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gtamsanalyzer
…
gwyddion
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
h5utils
…
h5z-zfp
…
harminv
…
hdf
…
hdf5
Add PARALLEL option
2019-09-30 11:32:04 +00:00
hdf5-18
…
healpix
…
highfive
science/highfive: Update 2.1 -> 2.1.1
2019-11-10 16:16:55 +00:00
hypre
…
iboview
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
InsightToolkit
- Update devel/gdcm to 3.0.4.
2019-10-19 23:45:10 +00:00
isaac-cfd
…
jdftx
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
jmol
science/jmol: Update 14.29.55 -> 14.30.0
2019-11-30 23:24:35 +00:00
jstrack
Update to version 3.4.0, which includes updated documentation, links to
2019-10-02 16:14:46 +00:00
kalzium
KDE Applications: update to 19.08.3
2019-11-09 08:13:40 +00:00
kim-api
science/kim-api: Update 2.1.2 -> 2.1.3
2019-08-31 14:45:22 +00:00
kst2
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
lammps
science/lammps: fix build on GCC architectures
2019-11-28 14:20:18 +00:00
lamprop
…
latte
devel/openmp: update to 9.0.0
2019-09-21 18:59:57 +00:00
libaec
…
libccp4
…
libcint
…
libctl
…
libefp
…
libgeodecomp
…
libghemical
Pet portlint (trailing whitespace).
2019-11-08 03:23:25 +00:00
libgridxc
…
libint
…
libint2
…
libkml
devel/google{test,mock}: update to 1.10.0
2019-10-05 00:42:20 +00:00
liblinear
…
libmsym
…
liboglappth
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
libquantum
…
libssm
…
libsvm
…
libsvm-python
…
libvdwxc
…
libxc
…
liggghts
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
lm
…
luscus
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
madness
Update devel/tbb to 2019.8 and bump dependent ports' revisions
2019-09-25 10:03:49 +00:00
maeparser
science/maeparser: Update 1.2.1 -> 1.2.2
2019-10-13 15:15:08 +00:00
massxpert
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
mbdyn
…
mcstas
…
mcstas-comps
…
mcxtrace
…
mcxtrace-comps
…
mdynamix
…
medit
Unbreak medit.
2019-11-20 20:40:53 +00:00
meep
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
metaphysicl
science/metaphysicl: 0.5.2 -> 0.6.0
2019-10-13 21:17:17 +00:00
minc2
…
mmdb2
…
mmtf-cpp
…
mol2ps
- Rebuild bootstrap (ppcx64 and ppc386) with ld patches
2019-09-03 15:51:50 +00:00
molgif
Bump PORTREVISION after r517743 to force relinking.
2019-11-16 12:52:39 +00:00
molscript
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
molsketch
…
mpb
…
mpqc
Unmark these ports broken on aarch64.
2019-11-08 03:54:11 +00:00
msms
…
multiwfn
…
namd
…
ncnn
science/ncnn: Update 20190908 -> 20191113
2019-11-16 09:22:44 +00:00
nest
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
netcdf
Update to 4.7.2
2019-10-23 17:44:44 +00:00
netcdf-cxx
Update to 4.3.1
2019-09-12 19:06:48 +00:00
netcdf-fortran
Update to 4.5.2
2019-09-26 18:13:09 +00:00
nifticlib
…
nwchem
science/nwchem: Update 6.8.1.20190820 -> 7.0.0-beta1
2019-11-23 17:44:06 +00:00
nwchem-data
…
octopus
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
openbabel
…
openkim
…
openkim-models
…
openmx
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
opensim-core
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
opensph
…
opsin
…
p5-Algorithm-SVMLight
…
p5-Chemistry-3DBuilder
…
p5-Chemistry-Bond-Find
…
p5-Chemistry-Canonicalize
…
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
…
p5-Chemistry-File-Mopac
…
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
…
p5-Chemistry-File-SMARTS
…
p5-Chemistry-File-SMILES
…
p5-Chemistry-File-VRML
…
p5-Chemistry-File-XYZ
…
p5-Chemistry-FormulaPattern
…
p5-Chemistry-InternalCoords
…
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
…
p5-Chemistry-Mok
…
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
…
p5-Chemistry-Reaction
…
p5-Chemistry-Ring
…
p5-Geo-BUFR
…
p5-Geo-Coordinates-Converter
…
p5-Geo-Coordinates-Converter-iArea
…
p5-Geo-ReadGRIB
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
p5-Geo-WebService-Elevation-USGS
Update to 0.116
2019-10-28 14:57:46 +00:00
p5-Mcstas-Tools
…
p5-PerlMol
…
p5-Physics-Unit
…
packmol
science/packmol: Pack molecules in defined regions of space
2019-09-22 19:06:43 +00:00
pagmo2
…
paje
…
paraview
Unbreak
2019-11-07 17:28:56 +00:00
pcmsolver
science/pcmsolver: fix build on GCC architectures
2019-10-27 19:19:07 +00:00
PETSc
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
pnetcdf
…
psychopy
…
pulseview
…
py-abipy
…
py-asdf
Change RUN_DEPENDS from py-semantic_version to py-semantic_version26
2019-09-26 18:16:28 +00:00
py-ase
science/py-ase: Update 3.18.0 -> 3.18.1
2019-09-21 14:18:58 +00:00
py-avogadrolibs
…
py-cdo
…
py-chainer
science/py-chainer: Update 6.4.0 -> 6.5.0
2019-10-29 03:28:14 +00:00
py-chainer-chemistry
science/py-chainer-chemistry: Update 0.5.0 -> 0.6.0
2019-10-06 17:48:09 +00:00
py-chempy
science/py-chempy: Update 0.7.8 -> 0.7.9
2019-10-12 15:55:43 +00:00
py-coards
…
py-DendroPy
…
py-dlib
Add USES=xorg and USES=gl
2019-11-07 18:41:56 +00:00
py-eccodes-python
Update to 0.9.3
2019-10-20 17:12:09 +00:00
py-geometer
Update to 0.2.0
2019-09-25 20:41:50 +00:00
py-gpaw
…
py-GPy
science/py-GPy: Update 1.9.8 -> 1.9.9
2019-10-20 00:41:22 +00:00
py-GPyOpt
…
py-gsd
science/py-gsd: Update 1.8.1 -> 1.9.3
2019-10-12 16:47:23 +00:00
py-h5py
Update to 2.10.0
2019-09-07 22:44:39 +00:00
py-hcluster
…
py-kinematics
…
py-lifelines
…
py-MDAnalysis
…
py-MDAnalysisTests
…
py-mdp
…
py-mlpy
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
py-mmtf-python
…
py-molmod
science/py-molmod: Update 1.4.4 -> 1.4.5
2019-10-12 16:44:38 +00:00
py-netCDF4
…
py-obspy
…
py-oddt
…
py-OpenFermion
…
py-openpiv
…
py-paida
…
py-paramz
…
py-phono3py
devel/openmp: update to 9.0.0
2019-09-21 18:59:57 +00:00
py-phonopy
science/py-phonopy: Update 2.2.0 -> 2.3.0
2019-08-31 06:06:51 +00:00
py-pupynere
…
py-pyaixi
…
py-pydicom
- Update to 1.3.0
2019-09-04 02:25:53 +00:00
py-PyFR
devel/openmp: update to 9.0.0
2019-09-21 18:59:57 +00:00
py-pygeodesy
…
py-pymatgen
…
py-pymol
…
py-pyosf
…
py-PyQuante
Unmark these ports broken on aarch64.
2019-11-08 03:54:11 +00:00
py-pysal
…
py-pyteomics
…
py-pyteomics.biolccc
…
py-qcelemental
science/py-qcelemental: Update 0.9.0 -> 0.11.0
2019-10-29 03:42:56 +00:00
py-qcengine
science/py-qcengine: Update 0.8.2 -> 0.10.0
2019-08-31 06:12:38 +00:00
py-qspin
…
py-quantities
…
py-rmf
…
py-rmsd
…
py-ruffus
…
py-ScientificPython
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
py-scikit-fuzzy
science/py-scikit-fuzzy: Update 0.4.1 -> 0.4.2
2019-11-16 09:42:27 +00:00
py-scikit-learn
Release.
2019-11-11 12:00:44 +00:00
py-scikit-sparse
…
py-scimath
…
py-scipy
…
py-scoria
…
py-SimpleSpectral
…
py-spglib
science/py-spglib: Update 1.13.0 -> 1.14.1
2019-08-31 15:13:52 +00:00
py-tensorflow
Unbreak bulk -a with non default versions of python3
2019-11-20 14:42:36 +00:00
py-tensorflow-estimator
Mark BROKEN: fails to build
2019-11-20 14:00:42 +00:00
py-veusz
science/py-veusz: Update 3.0.1 -> 3.1
2019-10-29 03:36:12 +00:00
py-ws2300
…
pybrain
…
pycdf
…
pynn
…
qbox
science/qbox: Update 1.67.4 -> 1.68.0
2019-09-21 06:35:02 +00:00
qcl
…
qmcpack
devel/openmp: update to 9.0.0
2019-09-21 18:59:57 +00:00
quantum-espresso
…
quantum-espresso-pseudopotentials
…
qwalk
…
R-cran-AMORE
…
R-cran-bayesm
- Update to 3.1.4
2019-11-29 23:26:04 +00:00
R-cran-cmprsk
- Update to 2.2-9
2019-10-11 09:12:52 +00:00
R-cran-DCluster
…
R-cran-e1071
- Update to 1.7-3
2019-11-28 14:43:13 +00:00
R-cran-eco
…
R-cran-Epi
- Update to 2.40
2019-11-28 00:12:45 +00:00
R-cran-epicalc
…
R-cran-etm
…
R-cran-fastICA
…
R-cran-kernlab
- Update to 0.9-29
2019-11-14 22:29:41 +00:00
R-cran-snow
…
R-cran-som
…
R-cran-udunits2
…
rdkit
…
rmf
…
rubygem-ai4r
…
rubygem-cdo
…
rubygem-rgeo
Update to 2.1.1
2019-08-28 23:53:27 +00:00
rubygem-rgeo-geojson
Cosmetic change
2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
Update version requirement of RUN_DEPENDS
2019-08-28 23:53:32 +00:00
rubygem-rgeo-shapefile
…
rubygem-ruby-dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
…
scidavis
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
siesta
…
sigrok-cli
…
sigrok-firmware
…
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.7
2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
…
silo
…
simbody
Sprinkle more USES=xorg
2019-11-07 20:19:59 +00:00
simgrid
science/simgrid: Update 3.23.2 -> 3.24
2019-12-01 00:09:47 +00:00
simint
…
simlib
…
simsmith
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
smoldyn
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
sparta
science/sparta: Update 16Apr2019 -> 9Sep2019
2019-09-10 03:18:50 +00:00
spglib
…
step
KDE Applications: update to 19.08.3
2019-11-09 08:13:40 +00:00
svmlight
…
szip
…
teem
…
tfel
science/tfel: completely disable the PYTHON option.
2019-12-01 15:56:04 +00:00
tinker
science/tinker: Update 8.7.1 -> 8.7.2
2019-11-29 07:44:51 +00:00
udunits
…
v_sim
Make fetchable again.
2019-11-19 21:38:47 +00:00
vipster
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
vmd
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
voro++
…
wannier90
…
wwplot
…
wxmacmolplt
…
xcrysden
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
xdrawchem
…
xfce4-equake-plugin
science/xfce4-equake-plugin: fix build on GCC architectures
2019-10-02 14:02:33 +00:00
yoda
…
Makefile
New port: science/highfive: Header-only C++ HDF5 interface
2019-11-03 01:27:45 +00:00