| .. |
|
ariadne
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
artemis
|
Remove dead master sites
|
2017-10-13 11:14:32 +00:00 |
|
avida
|
Mark some ports failing on power64. In cases where the error message
|
2017-05-13 03:35:51 +00:00 |
|
babel
|
|
|
|
bcftools
|
biology/htslib biology/bcftools biology/samtools: Update to 1.6
|
2017-10-25 10:19:50 +00:00 |
|
bedtools
|
Mark some ports failing on armv6, for errors classified as "clang".
|
2017-05-27 15:07:11 +00:00 |
|
biococoa
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
blat
|
- Update WWW
|
2017-06-10 09:01:19 +00:00 |
|
bowtie
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
bowtie2
|
Update tbb to 2018 and bump dependent ports' revisions
|
2017-09-17 07:03:14 +00:00 |
|
bwa
|
Mark some ports failing on armv6, for errors classified as "???".
|
2017-05-26 20:02:44 +00:00 |
|
cd-hit
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
cdbfasta
|
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
|
2017-01-20 20:33:30 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
|
|
|
crux
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
diamond
|
biology/diamond: Update to version 0.9.13
|
2017-11-17 20:11:05 +00:00 |
|
emboss
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
fastool
|
|
|
|
fasttree
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
fastx-toolkit
|
|
|
|
fluctuate
|
|
|
|
garlic
|
|
|
|
gff2ps
|
|
|
|
gmap
|
Mark some ports failing on power64. In cases where the error message
|
2017-05-13 03:35:51 +00:00 |
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
- Update to 3.1b2
|
2017-11-11 12:51:52 +00:00 |
|
htslib
|
biology/htslib biology/bcftools biology/samtools: Update to 1.6
|
2017-10-25 10:19:50 +00:00 |
|
iolib
|
Mark some ports failing on power64. In cases where the error message
|
2017-05-13 03:35:51 +00:00 |
|
iqtree
|
Fix USE_GITHUB usage.
|
2017-11-06 14:24:39 +00:00 |
|
jalview
|
|
|
|
jellyfish
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
lagan
|
|
|
|
lamarc
|
|
|
|
libgtextutils
|
|
|
|
libsbml
|
- Update to 5.15.0
|
2017-05-18 02:22:18 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
|
|
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
biology/molden: chase another intransparent upstream distfile upgrade.
|
2017-11-01 03:48:30 +00:00 |
|
mopac
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
mrbayes
|
Update devel/readline to 7.0 patch 3
|
2017-06-27 13:46:53 +00:00 |
|
mummer
|
- Fix installing scripts and support binaries
|
2017-10-30 02:27:23 +00:00 |
|
muscle
|
|
|
|
ncbi-blast+
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
ncbi-toolkit
|
|
|
|
njplot
|
|
|
|
p5-AcePerl
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-Coordinate
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-Das
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-Das-Lite
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-FeatureIO
|
Add p5-Bio-FeatureIO 1.6.905
|
2017-09-15 19:17:17 +00:00 |
|
p5-Bio-GFF3
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
|
|
|
p5-Bio-Phylo
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-Bio-SCF
|
|
|
|
p5-BioPerl
|
Fix license information for portgs that use "the same license as Perl".
|
2017-09-15 08:58:46 +00:00 |
|
p5-BioPerl-Run
|
Update to 1.007002
|
2017-09-15 19:17:44 +00:00 |
|
p5-transdecoder
|
|
|
|
paml
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
Update to 3.3.20170530
|
2017-09-04 00:01:36 +00:00 |
|
plink
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
plinkseq
|
Mark some ports failing on power64. In cases where the error message
|
2017-05-13 03:35:51 +00:00 |
|
primer3
|
|
|
|
protomol
|
Revision bump of all ports with USE_GL after consolidation of mesa-libs
|
2017-05-23 05:03:14 +00:00 |
|
psi88
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
py-biom-format
|
biology/py-biom-format: Update to version 2.1.6
|
2017-04-29 13:59:15 +00:00 |
|
py-biopython
|
- update to 1.70
|
2017-08-18 12:57:06 +00:00 |
|
py-bx-python
|
bx-python is a python library and associated set of scripts to allow for rapid
|
2017-05-06 06:07:03 +00:00 |
|
py-pysam
|
biology/py-pysam: Update to 0.13
|
2017-11-05 19:12:28 +00:00 |
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
python-nexus
|
- Update to 1.53
|
2017-07-23 08:15:07 +00:00 |
|
recombine
|
|
|
|
ruby-bio
|
- Update to 1.5.1
|
2017-05-07 15:44:34 +00:00 |
|
rubygem-bio
|
Update to 1.5.1
|
2017-02-06 23:03:17 +00:00 |
|
samtools
|
biology/htslib biology/bcftools biology/samtools: Update to 1.6
|
2017-10-25 10:19:50 +00:00 |
|
seaview
|
biology/seaview: Update version 4.6.1=>4.6.2
|
2017-07-21 17:33:10 +00:00 |
|
seqan
|
|
|
|
seqan1
|
|
|
|
seqan-apps
|
devel/boost-*: update to 1.65.1
|
2017-09-25 00:08:16 +00:00 |
|
seqio
|
|
|
|
seqtools
|
Remove USES=execinfo.
|
2017-09-22 10:48:28 +00:00 |
|
sim4
|
|
|
|
slclust
|
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
|
2017-01-20 20:33:30 +00:00 |
|
ssaha
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
t_coffee
|
Bump PORTREVISION for ports depending on the canonical version of GCC
|
2017-09-10 20:55:38 +00:00 |
|
tinker
|
Fix the context of some patches so that they apply with stricter patch(1)
|
2017-11-09 20:45:04 +00:00 |
|
treepuzzle
|
|
|
|
trimmomatic
|
|
|
|
tRNAscan-SE
|
Mark as broken ports with no public distfiles
|
2017-10-13 11:14:53 +00:00 |
|
ugene
|
Remove USES=execinfo.
|
2017-09-22 10:48:28 +00:00 |
|
vcftools
|
|
|
|
velvet
|
|
|
|
wise
|
|
|
|
xmolwt
|
|
|
|
Makefile
|
New port, biology/iqtree: Efficient phylogenomic software
|
2017-10-21 16:57:53 +00:00 |
