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Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp
87 lines
1.8 KiB
Makefile
87 lines
1.8 KiB
Makefile
# $FreeBSD$
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#
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COMMENT = Biology
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SUBDIR += L-Breeder
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SUBDIR += adun
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SUBDIR += ariadne
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SUBDIR += artemis
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SUBDIR += avida
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SUBDIR += babel
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SUBDIR += belvu
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SUBDIR += biococoa
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SUBDIR += biojava
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SUBDIR += blast
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SUBDIR += blat
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SUBDIR += boinc-simap
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SUBDIR += chemeq
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SUBDIR += clustalw
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SUBDIR += crimap
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SUBDIR += distribfold
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SUBDIR += dna-qc
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SUBDIR += dotter
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SUBDIR += embassy
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SUBDIR += emboss
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SUBDIR += fasta
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SUBDIR += fasta3
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SUBDIR += fastdnaml
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SUBDIR += finchtv
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SUBDIR += fluctuate
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SUBDIR += garlic
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SUBDIR += genpak
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SUBDIR += gff2ps
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SUBDIR += gmap
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SUBDIR += gperiodic
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SUBDIR += grappa
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SUBDIR += hmmer
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SUBDIR += jalview
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SUBDIR += kinemage
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SUBDIR += lagan
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SUBDIR += lamarc
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SUBDIR += libgenome
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SUBDIR += linux-foldingathome
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SUBDIR += lsysexp
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SUBDIR += mafft
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SUBDIR += migrate
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SUBDIR += molden
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SUBDIR += mopac
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SUBDIR += mrbayes
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SUBDIR += mummer
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SUBDIR += nab
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SUBDIR += ncbi-toolkit
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SUBDIR += ortep3
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SUBDIR += p5-AcePerl
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SUBDIR += p5-Bio-ASN1-EntrezGene
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SUBDIR += p5-Bio-Das
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SUBDIR += p5-Bio-Phylo
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SUBDIR += p5-bioperl
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SUBDIR += p5-bioperl-devel
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SUBDIR += p5-bioperl-run
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SUBDIR += p5-bioperl-run-devel
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SUBDIR += paml
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SUBDIR += phylip
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SUBDIR += platon
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SUBDIR += povchem
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SUBDIR += primer3
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SUBDIR += protomol
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SUBDIR += psi88
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SUBDIR += py-biopython
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SUBDIR += pymol
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SUBDIR += rasmol
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SUBDIR += recombine
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SUBDIR += ruby-bio
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SUBDIR += seaview
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SUBDIR += seqio
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SUBDIR += sim4
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SUBDIR += tRNAscan-SE
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SUBDIR += t_coffee
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SUBDIR += tinker
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SUBDIR += treepuzzle
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SUBDIR += treeviewx
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SUBDIR += wise
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SUBDIR += xdrawchem
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SUBDIR += xmolwt
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.include <bsd.port.subdir.mk>
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