Jason W. Bacon fbb86e94a8 biology/py-macs3: Update to 3.0.2 ... Some minor enhancements and improved docs Changes: https://github.com/macs3-project/MACS/releases Reported by: portscout		2024-09-14 08:23:32 -05:00
..
abyss	biology/abyss: update 2.3.8 → 2.3.9	2024-09-12 02:18:11 -07:00
ad2vcf
andi	biology/andi: New ports: Efficient estimation of evolutionary distances	2024-09-07 14:31:10 -07:00
artemis
atac-seq
augustus
avida
babel
bamtools	*/*: Bump dependencioes after devel/jsoncpp update	2024-09-12 09:20:06 -07:00
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bifrost
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig
biosoup
biostar-tools
bolt-lmm	*/*: Bump PORTVERSION of math/nlopt consumers	2024-08-25 15:33:16 +02:00
bowtie
bowtie2
btllib
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
fermi-lite	biology/fermi-lite: fix build on powerpc64le	2024-08-13 11:40:45 +02:00
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gffread
gkl
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree	biology/iqtree: Update to 2.3.6	2024-09-07 22:53:14 -03:00
jalview
jellyfish
kallisto
kmcp
lamarc
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml	biology/libsbml: Update to 5.20.4	2024-09-09 02:36:57 +08:00
libsedml
linux-foldingathome	biology/linux-foldingathome: Point MASTER_SITES to the new location	2024-08-12 14:58:05 +02:00
locarna
mafft
mapm3
mashmap
megahit
metaeuk
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+	devel/grpc: Update to 1.65.4	2024-08-15 18:55:25 +08:00
ncbi-cxx-toolkit	biology/ncbi-cxx-toolkit: update 28.0.7 → 28.0.8	2024-09-07 21:10:05 -07:00
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-htseq
py-libnuml
py-libsedml
py-loompy
py-macs2
py-macs3	biology/py-macs3: Update to 3.0.2	2024-09-14 08:23:32 -05:00
py-mrcfile
py-multiqc
py-newick
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal	biology/py-pyrodigal: update 3.5.1 → 3.5.2	2024-09-05 01:48:51 -07:00
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
R-cran-Biobase
R-cran-BiocGenerics
R-cran-BiocManager	biology/R-cran-BiocManager: Update version 1.30.24=>1.30.25	2024-09-08 19:28:55 +02:00
rainbow
rampler
readseq
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
salmon
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqkit
seqtk
seqwish
sigviewer
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise
Makefile	biology/andi: New ports: Efficient estimation of evolutionary distances	2024-09-07 14:31:10 -07:00