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freebsd-ports/science
History
Beat Gaetzi 8558ca7184 - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 
was released in 2007 and KDE 3.5.10 in 2008 and both are no longer
  maintained upstream nor in our tree.
- Set EXPIRATION_DATE to 2013-07-01

Discussed with:	bapt, tabthorpe
2012-12-30 12:03:51 +00:00
..
2d-rewriter
2dhf
abinit - update png to 1.5.10 2012-06-01 05:26:28 +00:00
afni s/X11BASE/LOCALBASE/, or equivalent. 2012-06-24 21:53:38 +00:00
avogadro science/openbabel: 2012-12-11 14:19:54 +00:00
bddsolve
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr
brian - Update to 1.4.0 2012-09-04 07:13:08 +00:00
buddy
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf
cdo - Convert to new options framework 2012-06-18 16:41:51 +00:00
cgnslib Fix HDF5 description. 2012-12-10 18:20:15 +00:00
checkmol - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
chemical-mime-data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel - update png to 1.5.10 2012-06-01 05:26:28 +00:00
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl - Update to 5.4.7 2012-12-13 02:25:38 +00:00
devisor Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
dlpoly-classic
dtiquery
ecs add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler - update png to 1.5.10 2012-06-01 05:26:28 +00:00
fastcap
fasthenry
felt - Update to version 3.07 2012-12-01 00:00:12 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvm Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess Fix typo. 2012-09-14 05:47:44 +00:00
gchemutils science/openbabel: 2012-12-11 14:19:54 +00:00
gdis - update png to 1.5.10 2012-06-01 05:26:28 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical science/openbabel: 2012-12-11 14:19:54 +00:00
ghmm
gnudatalanguage - Bump port after ImageMagick update 2012-12-11 20:54:22 +00:00
gramps Hand over port to new volunteer. 2012-11-02 14:26:22 +00:00
gromacs - convert to optionsNG 2012-10-06 20:50:12 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gsystem - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
gtamsanalyzer - reset MAINTAINER 2012-06-26 05:44:19 +00:00
gwyddion Update PCRE to 8.32 2012-12-10 19:11:11 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf5
hdf5-18 - Update to 1.8.9 2012-06-06 16:45:22 +00:00
hdf-java Convert to new option framework 2012-12-13 10:47:44 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.4.2 2012-12-20 02:23:04 +00:00
InsightToolkit
isaac-cfd
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium science/openbabel: 2012-12-11 14:19:54 +00:00
kmovisto - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst2 Update to 2.0.6 2012-10-11 11:25:19 +00:00
lamprop
libctl
libghemical science/openbabel: 2012-12-11 14:19:54 +00:00
libint
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear
liboglappth Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
libquantum
libsvm
libsvm-python
linsmith - Update to 0.99.24 2012-12-04 23:29:56 +00:00
massxpert - Update to version 3.3.0 [1] 2012-12-16 20:59:39 +00:00
mayavi - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mbdyn add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
mcstas - Remove SITE_PERL from *_DEPENDS 2012-06-30 14:53:22 +00:00
medit Upgrade to 2012.02.05. 2012-11-22 21:39:32 +00:00
meep
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Update to version 2.0.18 [1] 2012-07-20 16:33:32 +00:00
mol2ps - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
mpb
mpqc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mpqc-mpich
ncs Fix on FreeBSD-7.x. 2012-09-08 09:33:14 +00:00
netcdf
netcdf3-ftn
netcdf4
netcdf-ftn
nifticlib - Fix typos in COMMENT 2012-08-02 09:02:43 +00:00
omnetpp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
openbabel science/openbabel: 2012-12-11 14:19:54 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje - reset MAINTAINER 2012-06-26 05:44:19 +00:00
paraview - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
peekabot Revert Chris Petrik's ports to the pool. Thank you for all your work so far, and should you desire to return just let us know. 2012-12-10 01:20:16 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3
psychopy - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-biolccc Update to 1.4.0 2012-05-13 12:20:54 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy
py-netCDF4 - Update to 1.0.2 2012-11-27 03:28:28 +00:00
py-obspy-core - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.db - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.gse2 - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.imaging - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.iris - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.mseed - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.signal - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.taup - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.wav - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.xseed - Update to 0.7.0 2012-10-10 06:25:58 +00:00
py-paida
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Fix dep. 2012-11-08 11:37:48 +00:00
py-scimath
py-scipy - update to 0.11.0 2012-10-17 06:15:16 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf
pynn - Update to version 0.7.4 2012-11-30 23:50:36 +00:00
qcl
qtresistors - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
R-cran-AMORE update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-bayesm update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-DCluster update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-e1071 - Update to 1.6-1 2012-09-14 20:06:40 +00:00
R-cran-eco update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-Epi - Update to 1.1.40 2012-11-06 22:51:13 +00:00
R-cran-epicalc - Update to 2.15.1.0 2012-10-11 06:20:40 +00:00
R-cran-snow - Update to 0.3-10 2012-07-16 13:42:19 +00:00
R-cran-som update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.1 2012-10-21 15:13:44 +00:00
ruby-netcdf
rubygem-ai4r
silo - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
simlib
step - Detect eigen2 by checking for .pc file, not min. port version. 2012-06-27 01:14:01 +00:00
svmlight
szip
udunits
v_sim science/openbabel: 2012-12-11 14:19:54 +00:00
veusz - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vis5d+ - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vmd
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xmakemol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
xmds
Makefile science/openbabel: 2012-12-11 14:19:54 +00:00