Alexey Dokuchaev 70f863c983 - Update to version 1.16.1 ... - Explicitly list all required Qt components in USE_QT4 instead of relying on them being silently picked up through `www/webkit-qt4' dependency - Group *_build components together while here - Remove one REINPLACE_CMD call that is no longer needed		2015-03-23 01:44:43 +00:00
..
ariadne	misc/otter & biology/ariadne: Not jobs safe	2015-01-21 18:39:11 +00:00
artemis	- Add empty directory to plist	2015-03-11 14:41:53 +00:00
avida	Cleanup plist	2014-12-20 17:27:08 +00:00
babel
biococoa
biojava
blat	Update to upstream version 36	2015-01-01 18:17:53 +00:00
chemeq
clustalw
consed
crux
emboss	Fix packaging as a user (pkg already takes care of credentials)	2015-03-18 21:52:19 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib	biology/htslib: update 1.1 -> 1.2.1	2015-03-06 12:45:22 +00:00
iolib	- Update to 1.13.10	2015-03-04 13:17:46 +00:00
jalview
lagan
lamarc
libsbml	- Convert USE_PYTHON -> USES leftovers missed in the previous commits	2015-01-04 08:23:23 +00:00
linux-foldingathome	Cleanup plist	2014-12-20 17:27:08 +00:00
mafft
mapm3
migrate	- Update to 3.6.6	2015-01-31 06:35:24 +00:00
molden
mopac	- Upadate biology/mopac to version 1.15	2014-12-16 22:10:23 +00:00
mrbayes
mummer
muscle
ncbi-blast+	Add a run dependency used by update_blastdb.pl	2015-03-06 10:39:31 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl	- Simplify MASTER_SITES	2015-03-17 03:09:25 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite	Remove TEST dependency on p5-Test-Simple when the version in core is	2015-02-26 16:54:41 +00:00
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-Bio-MAGETAB	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo	- Update to 0.58	2014-12-07 04:41:47 +00:00
p5-Bio-SCF
p5-bioperl	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-bioperl-run	For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to	2015-03-20 20:07:50 +00:00
paml	- Pass maintainership to submitter	2015-01-19 12:11:25 +00:00
phrap
phred
phylip
phyml	Convert to USES=autoreconf	2014-12-28 19:14:13 +00:00
platon	Unbreak by upgrading to March 5, 2015 "release" from upstream.	2015-03-08 23:13:21 +00:00
plink
plinkseq
povchem	Cleanup plist	2014-12-20 17:27:08 +00:00
primer3
protomol	Bump portrevision after png update	2014-12-25 20:54:41 +00:00
psi88
py-biopython	biology/py-biopython:	2015-01-19 20:21:12 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio
samtools	biology/samtools: update 1.1 -> 1.2	2015-03-06 12:53:58 +00:00
seaview	biology/seaview: UNBREAK	2015-03-16 12:07:49 +00:00
seqan	biology/segan: Limit GCC to 4.8 while waiting for update	2015-03-21 11:53:27 +00:00
seqio
seqtools	biology/seqtools: 4.31 -> 4.32	2015-02-12 12:04:09 +00:00
sim4
ssaha	Cleanup plist	2014-12-20 17:27:08 +00:00
t_coffee	Remove Authors from pkg-descr	2015-03-02 23:09:43 +00:00
tinker	Update from 7.1.1 to 7.1.2.	2015-03-11 13:44:21 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	- Update to version 1.16.1	2015-03-23 01:44:43 +00:00
velvet	Designatate 4 ports as unsafe for parallel building	2015-01-19 17:43:57 +00:00
wise	Cleanup plist	2014-12-20 17:27:08 +00:00
xmolwt
Makefile	Remove expired ports:	2015-01-01 01:13:11 +00:00