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freebsd-ports/science
Steve Wills f64d997379 many ruby/rubygem ports: death of rubyforge.org
rubyforge.org shutdown on May 15, 2014. This commit accounts for that by doing
several things:

- Deprecate ruby that had only rubyforge.org as MASTER_SITES (and so are now
  only fetchable via our cache)
- Deprecate ports that depend on those
- Update the WWW pkg-descr line that points to rubyforge.org for rubygem ports
  (which are still fetchable from rubygems.org)

The next step will be to remove rubyforge.org from bsd.sites.mk, after these
deprecated ports are deleted.

Phabric:	D591
With hat:	ruby
Approved by:	portmgr (because of committing to unstaged graphics/mingplot port)
2014-08-19 15:35:35 +00:00
..
2d-rewriter - Update to 1.5 2014-06-05 19:36:14 +00:00
2dhf Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
abinit math/gsl: 2014-08-17 13:09:56 +00:00
afni math/gsl: 2014-08-17 13:09:56 +00:00
avogadro Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
bddsolve
bft Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 15:24:14 +00:00
bodr Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
brian - Added STAGE support 2014-05-31 04:56:47 +00:00
buddy Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
cdcl - Update to 5.4.8 2014-05-22 15:46:16 +00:00
cdf Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
cdo - Update to 1.6.4 2014-07-04 02:49:34 +00:00
cgnslib - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
cgribex - Add cgribex 1.6.3 2014-04-29 13:28:31 +00:00
checkmol Stagify. 2014-06-10 12:52:48 +00:00
chemical-mime-data Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
chemtool Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
chemtool-devel Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
clhep science/clhep: Upgrade version 2.1.0.1 => 2.2.0.1 and stage 2014-07-31 18:08:53 +00:00
colt Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
crf++ - Convert to USES=libtool 2014-07-08 15:18:44 +00:00
dcl Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
devisor Stagify. 2014-06-10 14:43:35 +00:00
dlpoly-classic - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
dtiquery Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
ecs Fix build with texlive 2014-07-21 21:57:18 +00:00
elmer-eio Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-hutiter Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
elmer-matc Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-meshgen2d Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmergrid Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmerpost Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
epte
fastcap Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fasthenry Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fisicalab math/gsl: 2014-08-17 13:09:56 +00:00
fvcom - Update to 4.4.0 2014-08-15 21:08:21 +00:00
fvcom-mpi - Update to 4.4.0 2014-08-15 21:08:21 +00:00
fvm - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
g3data Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
gamess Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
gchemutils When linking a library libA with a library libB using libtool, if libB.la 2014-04-23 13:25:16 +00:00
getdp math/gsl: 2014-08-17 13:09:56 +00:00
ghemical - Stagify 2014-08-06 16:05:23 +00:00
ghmm - Convert to USES=libtool 2014-07-08 14:50:22 +00:00
gnudatalanguage math/gsl: 2014-08-17 13:09:56 +00:00
gramps - Update to version 3.4.8 (Latest Gtk2 version) 2014-07-27 14:05:33 +00:00
gromacs science/gromacs: Upgrade version 4.6.5 => 5.0 2014-08-10 00:03:09 +00:00
gsmc
gtamsanalyzer Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
gwyddion Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
h5utils Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
harminv - Switch to USES=libtool, drop .la files 2014-08-18 10:56:31 +00:00
hdf - USES=libtool tar:bzip2 2014-07-08 14:49:02 +00:00
hdf5 - Mark MAKE_JOBS_UNSAFE 2014-05-24 06:50:24 +00:00
hdf-java Convert GMAKE to MAKE_CMD 2014-06-25 05:35:31 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.8.3 2014-08-10 22:34:50 +00:00
InsightToolkit
isaac-cfd
jmol
jstrack Mark BROKEN: Checksum and size mismatch 2014-08-01 17:26:45 +00:00
kalzium Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
kst2 math/gsl: 2014-08-17 13:09:56 +00:00
lamprop science/lamprop: switch to USES=python 2014-08-16 11:42:41 +00:00
libctl Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
libghemical - Switch to USES=libtool, drop .la files 2014-08-06 16:06:22 +00:00
libint - Stagify 2014-08-06 16:06:55 +00:00
libkml - Add SWIG option 2014-05-25 18:47:55 +00:00
liblinear Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
liboglappth - Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 13:54:24 +00:00
libquantum Convert to USES=libtool 2014-07-08 13:34:32 +00:00
libsvm Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
libsvm-python - Update to 3.18 2014-05-30 13:47:15 +00:00
linsmith - maintain by hamradio as we have gsmc another smith charting program 2014-06-29 11:55:30 +00:00
massxpert - Support staging. 2014-06-30 20:38:59 +00:00
mbdyn Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
mcstas Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
medit Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
meep - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
mei - Add USES=libtool 2014-07-07 21:57:42 +00:00
metaf2xml Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
minc Mark BROKEN: Fails to build 2014-05-18 15:42:09 +00:00
minc2 science/minc2: Unbreak, Upgrade version 2.0.18 => 2.2.00 and stage 2014-07-29 21:33:51 +00:00
mol2ps Stagify. 2014-06-10 14:46:36 +00:00
mpb Mark BROKEN: Fails to build 2014-05-18 15:40:13 +00:00
mpqc - Bump PORTREVISION to force rebuild of .la file 2014-08-06 23:57:20 +00:00
mpqc-mpich
ncs - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
netcdf Fix packaging with default options (without DOXYGEN) 2014-05-03 11:43:26 +00:00
netcdf-cxx - Use USE_GITHUB 2014-08-15 17:27:48 +00:00
netcdf-fortran - Cleanup Makefile 2014-08-17 09:56:47 +00:00
nifticlib
openbabel The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
openkim Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Algorithm-SVMLight Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB - Pass maintainership to perl@ 2014-05-22 15:02:27 +00:00
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.27 2014-06-25 12:14:23 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
paraview Bump PORTREVISION for jbigkit library version bump. 2014-06-22 16:46:17 +00:00
pnetcdf - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
psi3 Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
psychopy - Enable stagedir support 2014-06-22 10:55:50 +00:00
pulseview science/pulseview: Remove unnecessary RUN_DEPENDS 2014-08-03 16:16:21 +00:00
py-coards
py-DendroPy - Support staging 2014-06-01 21:30:40 +00:00
py-h5py science/py-h5py: Upgrade to 2.3.0 2014-06-09 05:07:54 +00:00
py-hcluster science/py-hcluster: support stage 2014-06-26 14:27:46 +00:00
py-mdp Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
py-mlpy math/gsl: 2014-08-17 13:09:56 +00:00
py-netCDF4 - Pass maintainership to submitter 2014-06-07 18:15:43 +00:00
py-obspy - Remove easy_install dependency 2014-06-15 08:23:19 +00:00
py-paida science/py-paida: support stage 2014-08-05 13:22:35 +00:00
py-pupynere
py-pyaixi
py-pydap science/py-pydap: remove useless python knobs 2014-06-20 01:48:34 +00:00
py-pydicom - Added STAGE support 2014-05-31 13:51:28 +00:00
py-scikit-learn Update to versiob 0.15.0 2014-07-16 11:53:12 +00:00
py-scimath - Add STAGE support 2014-05-31 13:54:24 +00:00
py-scipy Fix packaging with pkg-install 2014-06-17 19:39:23 +00:00
py-ws2300 - Update to 1.9 2014-05-29 05:11:17 +00:00
pybrain - Update to 0.3.2 2014-05-31 13:59:02 +00:00
pycdf science/pycdf: support stage and use auto plist 2014-08-05 13:27:44 +00:00
pynn remove NO_STAGE. 2014-06-10 14:48:43 +00:00
pyteomics
pyteomics.biolccc
qcl - Update to 0.6.4 2014-05-17 10:53:20 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-snow
R-cran-som
ruby-dcl many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
ruby-gphys many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
ruby-netcdf many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
rubygem-ai4r many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
rubygem-netcdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
sigrok-cli science/sigrok-cli: update to 0.5.0 2014-07-28 23:06:29 +00:00
sigrok-firmware Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw Add new port: science/sigrok-firmware-fx2lafw 2014-08-03 22:24:50 +00:00
sigrok-firmware-utils Add new port: science/sigrok-firmware-utils 2014-08-03 22:09:07 +00:00
silo - Add USES=libtool 2014-07-07 21:56:17 +00:00
simlib Stagify. 2014-06-10 15:07:59 +00:00
simsmith Java based Smith chart program. Performs single-frequency and sweep charting 2014-07-03 21:02:10 +00:00
step math/gsl: 2014-08-17 13:09:56 +00:00
svmlight In some straightforward cases, protect documentation behind 2014-08-04 03:40:14 +00:00
szip - Add my LOCAL to MASTER_SITES 2014-04-29 13:28:25 +00:00
udunits - Revert r362761 2014-07-25 07:35:24 +00:00
v_sim - Add USES=libtool 2014-07-07 21:35:34 +00:00
veusz
vmd Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
voro++
x11iraf Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
xfce4-equake-plugin - Fix checksum 2014-04-27 15:10:34 +00:00
xmakemol Stagify. 2014-06-10 15:13:44 +00:00
xmds Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
Makefile Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00